| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0344 |
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| Symbol | rpsD |
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| ID | 4688859 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 340964 |
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| End bp | 341587 |
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| Gene Length | 624 bp |
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| Protein Length | 207 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639833336 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_980588 |
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| Protein GI | 121603259 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.311272 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000419462 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | GTGGCACGTT ACCTCGGCCC CAAGGCCAAA CTATCACGCC GTGAAGGCAC CGATCTTTTC
CTGAAAAGCG CCCGTCGCTC GATCAGCGAC AAGGCAAAAT TCGACTCCAA GCCAGGTCAG
CATGGCCGTA CCTCCGGTAC GCGCACTTCC GACTACGGTC TGCAACTGCG TGAAAAGCAG
AAAGTCAAGC GCATGTATGG CGTTCTTGAA AAGCAGTTCC GCCGCTACTT CGAAGAAGCT
GATCGCCGCC GTGGCAACAC TGGCGCCAAT TTGCTGTCGG TGCTGGAATC GCGTCTGGAC
AATGTGGTTT ACCGGATGGG TTTTGGATCG ACACGCGCTG AAGCGCGCCA GTTGGTTTCC
CACAAGGCAA TGACCGTCAA CGGCCAGTCG GTCAATATTC CATCTTACAT GGTCAAGGCC
GGTGATGTGA TTGCCGTTCG CGACAAGTCT AAAAAGCAGA CGCGCATTGC TGAAGCGCTC
GAACTTGCCA AGCAGGTTGG CCTTCCTGCC TGGGTGGATG TCAATGCTGA CAAGGGTGAA
GGTACCTTCA AGAAAGTGCC TGATCGTGAC GAATTTGCTG CCGACATCAA CGAATCGTTG
ATCGTCGAGT TGTACTCACG TTAA
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| Protein sequence | MARYLGPKAK LSRREGTDLF LKSARRSISD KAKFDSKPGQ HGRTSGTRTS DYGLQLREKQ
KVKRMYGVLE KQFRRYFEEA DRRRGNTGAN LLSVLESRLD NVVYRMGFGS TRAEARQLVS
HKAMTVNGQS VNIPSYMVKA GDVIAVRDKS KKQTRIAEAL ELAKQVGLPA WVDVNADKGE
GTFKKVPDRD EFAADINESL IVELYSR
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