Gene Pnap_2139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_2139 
Symbol 
ID4688040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp2279372 
End bp2280244 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content72% 
IMG OID639835149 
ProductHpcH/HpaI aldolase 
Protein accessionYP_982368 
Protein GI121605039 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2301] Citrate lyase beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.747659 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.00493167 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTCTGAAA TACCTGTGAC CCTGGCGCTG GCTTCGGCGC GCTCCTTTTT GTTTGTTCCC 
GCCACCCGGC CCGAGCGCTT TGCCAAGGCG CTGGCATCCG GTGCCGACGC CGTCATCATC
GACCTGGAAG ATGCGGTGGC CCCGGCCGAC AAGAGCGCCG CACGGCAGGC CCTGCTGCAG
GCGTTTGACG GCATTGATGC GGCCCAGCGC CATCGCTTGC TGGTGCGCAT CAACGCCGCC
GGCACGCCCT GGCATGCCGA CGACCTGATC GCCCTGCGCG AGCTGGCCGC GCACGGACTT
GGCGCGGTGA TGGTGTCCAA GGCCGAATCG GCGGCCGTGC TGGATGAGGT GGCGGCGCAC
GCCGGCCCCT CCTGCGCGCT GCTGCCGCTG ATCGAGTCGG TCGCCGGCCT CGATGCCGTT
GATGCGCTGG CGGCCTGCCC GCGGGTAGCG CGCCTGGCCT TCGGCCATCT CGATTTCCAG
GCCGATGCGG GCCTGGCCTG CGATGCGGCC GAGCTTGAAC TGATACCCGT GCGCCTGGCG
CTGGTGCTGG CGTCGCGCCG CGCCGCTCTA GCCGCGCCGG TCGATGGCAT TTCGCCCGGT
ACGCGGGACA CGGCGCAGCT GAGCCTTGAC GCGGCGCGCA GCCGGCGCGG CGGCTTTGGC
GGCAAGCTGT GCATCCACCC GGCGCAGGCG GCGGCGGTCA ATGCGGCGTT CTCGCCCGGC
GCGGCCGAGA TCGACTGGGC GCGGCGCGTG CAGGCAGCCT TCGAGGCGGC CGGCGGCGGC
GTGTTCAGCC TCGATGGCCG CATGGTGGAT GCGCCGGTAT TGCTCCTGGC GCAGCGCACG
CTGGCGCAGG CGGCGCTGCA TGCGCTGACG TAG
 
Protein sequence
MSEIPVTLAL ASARSFLFVP ATRPERFAKA LASGADAVII DLEDAVAPAD KSAARQALLQ 
AFDGIDAAQR HRLLVRINAA GTPWHADDLI ALRELAAHGL GAVMVSKAES AAVLDEVAAH
AGPSCALLPL IESVAGLDAV DALAACPRVA RLAFGHLDFQ ADAGLACDAA ELELIPVRLA
LVLASRRAAL AAPVDGISPG TRDTAQLSLD AARSRRGGFG GKLCIHPAQA AAVNAAFSPG
AAEIDWARRV QAAFEAAGGG VFSLDGRMVD APVLLLAQRT LAQAALHALT