10 homologs were found in PanDaTox collection
for query gene Pnap_3930 on replicon NC_008781
Organism: Polaromonas naphthalenivorans CJ2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008781  Pnap_3930  hypothetical protein  100 
 
 
465 aa  905    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.756384  decreased coverage  0.0000317604 
 
 
-
 
NC_012791  Vapar_4571  hypothetical protein  30 
 
 
356 aa  88.2  3e-16  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_001845  hypothetical protein  35.07 
 
 
354 aa  56.6  0.0000008  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C4730  hypothetical protein  34.13 
 
 
359 aa  55.8  0.000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.612439  normal 
 
 
-
 
NC_007974  Rmet_3749  methyl-accepting chemotaxis protein  32.38 
 
 
368 aa  50.1  0.00008  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1362  hypothetical protein  55.93 
 
 
471 aa  48.9  0.0002  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00115802  normal 
 
 
-
 
NC_008576  Mmc1_2710  hypothetical protein  55.93 
 
 
471 aa  48.9  0.0002  Magnetococcus sp. MC-1  Bacteria  decreased coverage  0.0000730079  normal  0.03873 
 
 
-
 
NC_010501  PputW619_2060  hypothetical protein  38.38 
 
 
334 aa  46.6  0.0009  Pseudomonas putida W619  Bacteria  normal  0.12484  normal  0.424473 
 
 
-
 
NC_007777  Francci3_2437  hypothetical protein  59.15 
 
 
349 aa  45.1  0.003  Frankia sp. CcI3  Bacteria  normal  normal  0.298046 
 
 
-
 
NC_008761  Pnap_4768  hypothetical protein  72.73 
 
 
234 aa  43.1  0.01  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.532508 
 
 
-
 
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