| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3559 |
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| Symbol | |
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| ID | 4688686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 3780600 |
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| End bp | 3781673 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639836572 |
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| Product | TRAP-type uncharacterized transport system protein, periplasmic component |
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| Protein accession | YP_983776 |
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| Protein GI | 121606447 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00321852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAC TCGTATTGGG CACGCTGCTG ATGGCCGGGA TGCTCTGCCA CGGCCCGGCG
GCCGCTGCGG TGGAATACAA AATCGTCACC GCTTCGGAGC GCGGAACCTA TATCAAGATC
GGGCGCGACC TGGCCCAGTT CGTGGCGCCC TCGGCGGACA TCCAGCTCGA CGCCCTGCCT
TCGGCCGGAT CGGCCGAGAA CGTCCGGCTG CTGCGCTACG AGCCGGGCAT CAAGCTGGCC
CTGGTGCAGT CGGACGTGTA CCAGTCCTTT CTCGACATCG CCGCCGGCGG CAACGCAGCC
GCCCGCGACA TGATCGCGCC GCTGCGCGTG ATCATGCCGC TGTACAACGA GGAAATCTAC
TTTGTCGTGC GGGCCGACTC GGAGCGCAAC TTCATCCATG AGATCAAGAA TGCAAAGATC
AACGCAGGCG AGTCGGGCAG CGGCACGGCG CTGACCTCGG CAACGCTGTA TCGCCTGATG
TTTGGCGAAG CCATGCCGGA CGCCAGCGCA AGCTACCTGT CCAACGAGGA GGCGCTGGCG
AAACTGGTCA CGGACAAGAC CCTTGACGTG GTCGCGGTCG TCGCCGGGCA GCCCGCCAAG
CTGCTGGTTG ACATGAAGCC CGAGTCGCGA AAACTCATCA AGCTGCTCAA GTTCGACCCC
GGCCATCCTT CCAGCAAGGC GGTGCTCAAG ACCTATTTCC AGGCCAGCGT GCGCGCCAGC
AATTATCCCA ACCTGCTCAC GGAGGATATT GCCGGGCTGG CCGTCAAGGC CTTTCTCGTC
ACCTACGATT TCCAGCTGAA GGACACCGAG AGCCACCTGC GGGGCATGGC GCGCTCGCTG
TGCCAGAACT TTTCGGTGCT GCAGGAAAAG GGACACCCGA AGTGGCGCGA GGTAGAGCTT
GCGCTGCCGG ACCTCGGCCG TGGATGGTTC TACTACGGCC CGACGACGCG CGAACTCCGC
TCCTGCATCG CCGGAGAACC CGCAAGAAAG AGGGTGGTCA GCCGGGCGAA GCCGTCGCCG
CCGCCAGCGA AGGAGTGCCC GCAGCAGGAA CGCATCCTGG GGCTGTGCAA ATAG
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| Protein sequence | MKKLVLGTLL MAGMLCHGPA AAAVEYKIVT ASERGTYIKI GRDLAQFVAP SADIQLDALP
SAGSAENVRL LRYEPGIKLA LVQSDVYQSF LDIAAGGNAA ARDMIAPLRV IMPLYNEEIY
FVVRADSERN FIHEIKNAKI NAGESGSGTA LTSATLYRLM FGEAMPDASA SYLSNEEALA
KLVTDKTLDV VAVVAGQPAK LLVDMKPESR KLIKLLKFDP GHPSSKAVLK TYFQASVRAS
NYPNLLTEDI AGLAVKAFLV TYDFQLKDTE SHLRGMARSL CQNFSVLQEK GHPKWREVEL
ALPDLGRGWF YYGPTTRELR SCIAGEPARK RVVSRAKPSP PPAKECPQQE RILGLCK
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