More than 300 homologs were found in PanDaTox collection
for query gene TM1040_1487 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_1487  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  100 
 
 
462 aa  936    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1379  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  51.22 
 
 
452 aa  378  1e-103  Jannaschia sp. CCS1  Bacteria  normal  normal  0.170039 
 
 
-
 
NC_009636  Smed_2893  methyl-accepting chemotaxis sensory transducer  46.03 
 
 
589 aa  362  1e-98  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_2775  methyl-accepting chemotaxis protein  47.48 
 
 
558 aa  360  3e-98  Agrobacterium vitis S4  Bacteria  normal  0.536477  n/a   
 
 
-
 
NC_011369  Rleg2_3632  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  47.2 
 
 
592 aa  359  4e-98  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.377399 
 
 
-
 
NC_012848  Rleg_5255  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  46.36 
 
 
585 aa  358  9.999999999999999e-98  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.700683  normal 
 
 
-
 
NC_012850  Rleg_3921  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  45.41 
 
 
586 aa  358  9.999999999999999e-98  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5535  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  47.24 
 
 
591 aa  353  2.9999999999999997e-96  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.435889 
 
 
-
 
NC_011989  Avi_4091  methyl-accepting chemotaxis protein  48.41 
 
 
592 aa  353  4e-96  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_2195  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  47.11 
 
 
577 aa  351  2e-95  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_011982  Avi_8025  sensory methylation accepting chemotaxis protein  45.8 
 
 
594 aa  347  3e-94  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0110  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  45.81 
 
 
588 aa  345  8.999999999999999e-94  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.885184  normal  0.0508963 
 
 
-
 
NC_010338  Caul_1141  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  42.28 
 
 
501 aa  343  2.9999999999999997e-93  Caulobacter sp. K31  Bacteria  normal  0.489477  hitchhiker  0.000166409 
 
 
-
 
NC_011989  Avi_2952  sensory methylation accepting chemotaxis protein  46.08 
 
 
575 aa  339  5.9999999999999996e-92  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_2791  methyl-accepting chemotaxis protein  42.92 
 
 
622 aa  329  8e-89  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1288  methyl-accepting chemotaxis sensory transducer  42.42 
 
 
591 aa  326  5e-88  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3301  methyl-accepting chemotaxis sensory transducer  43.26 
 
 
626 aa  325  2e-87  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_1697  methyl-accepting chemotaxis sensory transducer  42.18 
 
 
591 aa  323  3e-87  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7643  sensory methylation accepting chemotaxis protein  44.47 
 
 
575 aa  305  1.0000000000000001e-81  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2418  methyl-accepting chemotaxis protein  41.6 
 
 
659 aa  305  1.0000000000000001e-81  Vibrio cholerae O395  Bacteria  hitchhiker  0.00134538  n/a   
 
 
-
 
NC_011071  Smal_2405  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.43 
 
 
608 aa  295  2e-78  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.152873  normal  0.816188 
 
 
-
 
NC_007520  Tcr_2004  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  38.03 
 
 
591 aa  293  4e-78  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  0.0000000000169064  n/a   
 
 
-
 
NC_009485  BBta_2145  methyl-accepting chemotaxis protein  41.01 
 
 
781 aa  291  2e-77  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.297887  normal 
 
 
-
 
NC_008043  TM1040_3209  methyl-accepting chemotaxis sensory transducer  53.82 
 
 
782 aa  290  6e-77  Ruegeria sp. TM1040  Bacteria  normal  0.684679  normal 
 
 
-
 
NC_008043  TM1040_3194  methyl-accepting chemotaxis sensory transducer  58.68 
 
 
614 aa  276  4e-73  Ruegeria sp. TM1040  Bacteria  normal  0.311641  normal 
 
 
-
 
NC_010338  Caul_0276  methyl-accepting chemotaxis sensory transducer  49.09 
 
 
657 aa  273  4.0000000000000004e-72  Caulobacter sp. K31  Bacteria  normal  0.461968  normal  0.560518 
 
 
-
 
NC_011666  Msil_1449  methyl-accepting chemotaxis sensory transducer  46.91 
 
 
647 aa  267  2e-70  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010581  Bind_3620  methyl-accepting chemotaxis sensory transducer  52.36 
 
 
677 aa  267  2.9999999999999995e-70  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.0125911 
 
 
-
 
NC_008044  TM1040_2002  methyl-accepting chemotaxis sensory transducer  52.61 
 
 
530 aa  263  4.999999999999999e-69  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_0489  methyl-accepting chemotaxis sensory transducer  51.32 
 
 
698 aa  263  6e-69  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.000832175  normal 
 
 
-
 
NC_012850  Rleg_0214  methyl-accepting chemotaxis sensory transducer  51.92 
 
 
663 aa  262  8.999999999999999e-69  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.287216 
 
 
-
 
NC_010338  Caul_0236  methyl-accepting chemotaxis sensory transducer  47.53 
 
 
660 aa  261  2e-68  Caulobacter sp. K31  Bacteria  normal  0.105118  normal 
 
 
-
 
NC_011369  Rleg2_0052  methyl-accepting chemotaxis sensory transducer  48.61 
 
 
778 aa  260  3e-68  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0947231 
 
 
-
 
NC_011989  Avi_0994  methyl-accepting chemotaxis protein  48.73 
 
 
649 aa  259  6e-68  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011370  Rleg2_6126  methyl-accepting chemotaxis sensory transducer  47.13 
 
 
650 aa  259  9e-68  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.375381  normal  0.0878449 
 
 
-
 
NC_010338  Caul_1355  methyl-accepting chemotaxis sensory transducer  51.02 
 
 
494 aa  258  2e-67  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_2177  methyl-accepting chemotaxis sensory transducer  49.66 
 
 
602 aa  256  4e-67  Caulobacter sp. K31  Bacteria  normal  0.180362  normal  0.483778 
 
 
-
 
NC_011989  Avi_3729  methyl-accepting chemotaxis protein  49.83 
 
 
644 aa  257  4e-67  Agrobacterium vitis S4  Bacteria  normal  0.554142  n/a   
 
 
-
 
NC_011369  Rleg2_0369  methyl-accepting chemotaxis sensory transducer  51.2 
 
 
615 aa  256  7e-67  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00881781 
 
 
-
 
NC_011369  Rleg2_0368  methyl-accepting chemotaxis sensory transducer  46.52 
 
 
843 aa  256  7e-67  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0662296 
 
 
-
 
NC_008044  TM1040_0359  methyl-accepting chemotaxis sensory transducer  52.82 
 
 
927 aa  256  8e-67  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0839  methyl-accepting chemotaxis sensory transducer  52.82 
 
 
927 aa  255  1.0000000000000001e-66  Ruegeria sp. TM1040  Bacteria  normal  0.587759  normal  0.752939 
 
 
-
 
NC_011369  Rleg2_0185  methyl-accepting chemotaxis sensory transducer  49.18 
 
 
669 aa  255  1.0000000000000001e-66  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0400  methyl-accepting chemotaxis sensory transducer  46.52 
 
 
843 aa  255  1.0000000000000001e-66  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.00170819 
 
 
-
 
NC_009636  Smed_0051  methyl-accepting chemotaxis sensory transducer  50.52 
 
 
796 aa  254  2.0000000000000002e-66  Sinorhizobium medicae WSM419  Bacteria  normal  hitchhiker  0.000000874578 
 
 
-
 
NC_012850  Rleg_0401  methyl-accepting chemotaxis sensory transducer  50.52 
 
 
615 aa  254  2.0000000000000002e-66  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.000192098 
 
 
-
 
NC_010581  Bind_1798  methyl-accepting chemotaxis sensory transducer  49.13 
 
 
615 aa  253  4.0000000000000004e-66  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.371991  normal 
 
 
-
 
NC_010338  Caul_4292  methyl-accepting chemotaxis sensory transducer  50.52 
 
 
535 aa  253  6e-66  Caulobacter sp. K31  Bacteria  normal  normal  0.432431 
 
 
-
 
NC_011368  Rleg2_4524  methyl-accepting chemotaxis sensory transducer  50.35 
 
 
661 aa  252  8.000000000000001e-66  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.66296 
 
 
-
 
NC_010335  Caul_5142  methyl-accepting chemotaxis sensory transducer  47.65 
 
 
599 aa  251  2e-65  Caulobacter sp. K31  Bacteria  normal  0.367406  normal  0.838811 
 
 
-
 
NC_012850  Rleg_0943  methyl-accepting chemotaxis sensory transducer with Cache sensor  48.37 
 
 
793 aa  251  2e-65  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.27721  normal 
 
 
-
 
NC_008044  TM1040_1383  methyl-accepting chemotaxis sensory transducer  52.73 
 
 
705 aa  250  3e-65  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_2928  methyl-accepting chemotaxis protein  48.65 
 
 
792 aa  250  5e-65  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0222  methyl-accepting chemotaxis sensory transducer  50.69 
 
 
642 aa  249  5e-65  Caulobacter sp. K31  Bacteria  normal  0.414219  normal  0.376796 
 
 
-
 
NC_012850  Rleg_2464  methyl-accepting chemotaxis sensory transducer with Cache sensor  50.65 
 
 
605 aa  249  7e-65  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012854  Rleg_6402  methyl-accepting chemotaxis sensory transducer  48.68 
 
 
688 aa  249  7e-65  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.579482  normal  0.320846 
 
 
-
 
NC_007802  Jann_3360  methyl-accepting chemotaxis sensory transducer  46.23 
 
 
648 aa  248  1e-64  Jannaschia sp. CCS1  Bacteria  normal  0.59059  normal 
 
 
-
 
NC_011988  Avi_5151  methyl-accepting chemotaxis protein  46.69 
 
 
776 aa  248  2e-64  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3177  methyl-accepting chemotaxis sensory transducer  49.83 
 
 
749 aa  247  3e-64  Ruegeria sp. TM1040  Bacteria  normal  0.726311  normal 
 
 
-
 
NC_008044  TM1040_0984  methyl-accepting chemotaxis sensory transducer  52.58 
 
 
608 aa  247  4e-64  Ruegeria sp. TM1040  Bacteria  normal  0.0666136  normal  0.983928 
 
 
-
 
NC_008044  TM1040_2453  methyl-accepting chemotaxis sensory transducer  50.62 
 
 
788 aa  246  4.9999999999999997e-64  Ruegeria sp. TM1040  Bacteria  normal  0.925334  normal  0.122382 
 
 
-
 
NC_011369  Rleg2_2181  methyl-accepting chemotaxis sensory transducer  51.5 
 
 
606 aa  246  4.9999999999999997e-64  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.440189  normal  0.953277 
 
 
-
 
NC_011989  Avi_2927  methyl-accepting chemotaxis protein  49.83 
 
 
730 aa  246  9e-64  Agrobacterium vitis S4  Bacteria  normal  0.0257741  n/a   
 
 
-
 
NC_009484  Acry_2705  methyl-accepting chemotaxis sensory transducer  41.98 
 
 
509 aa  245  9.999999999999999e-64  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0606  methyl-accepting chemotaxis sensory transducer  48.17 
 
 
644 aa  244  3e-63  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.307243 
 
 
-
 
NC_011989  Avi_1117  methyl-accepting chemotaxis protein  44.17 
 
 
657 aa  243  5e-63  Agrobacterium vitis S4  Bacteria  normal  0.593573  n/a   
 
 
-
 
NC_011989  Avi_0988  methyl-accepting chemotaxis protein  49.14 
 
 
695 aa  243  7e-63  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0958  methyl-accepting chemotaxis protein  48.81 
 
 
610 aa  242  7.999999999999999e-63  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_2608  methyl-accepting chemotaxis protein  47.56 
 
 
655 aa  242  7.999999999999999e-63  Agrobacterium vitis S4  Bacteria  normal  0.445883  n/a   
 
 
-
 
NC_012850  Rleg_0581  methyl-accepting chemotaxis sensory transducer with Cache sensor  49 
 
 
607 aa  241  1e-62  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.893675 
 
 
-
 
NC_011989  Avi_3714  methyl-accepting chemotaxis protein  46.56 
 
 
679 aa  241  1e-62  Agrobacterium vitis S4  Bacteria  normal  0.0885803  n/a   
 
 
-
 
NC_011989  Avi_1159  methyl-accepting chemotaxis protein  54.17 
 
 
671 aa  241  2e-62  Agrobacterium vitis S4  Bacteria  normal  0.573311  n/a   
 
 
-
 
NC_008043  TM1040_3179  methyl-accepting chemotaxis sensory transducer  51.97 
 
 
885 aa  240  2.9999999999999997e-62  Ruegeria sp. TM1040  Bacteria  normal  normal  0.498273 
 
 
-
 
NC_012850  Rleg_0580  methyl-accepting chemotaxis sensory transducer with Cache sensor  50.35 
 
 
606 aa  240  4e-62  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.237889  normal 
 
 
-
 
NC_011989  Avi_2600  methyl-accepting chemotaxis protein  51.41 
 
 
633 aa  240  4e-62  Agrobacterium vitis S4  Bacteria  normal  0.390364  n/a   
 
 
-
 
NC_009484  Acry_2144  methyl-accepting chemotaxis sensory transducer  48.11 
 
 
556 aa  240  4e-62  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011984  Avi_9088  methyl-accepting chemotaxis protein  45.37 
 
 
761 aa  239  8e-62  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0305  methyl-accepting chemotaxis sensory transducer  46.74 
 
 
841 aa  239  8e-62  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0806  methyl-accepting chemotaxis protein  48.45 
 
 
842 aa  239  9e-62  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1208  methyl-accepting chemotaxis protein  48.29 
 
 
604 aa  239  9e-62  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0537  methyl-accepting chemotaxis sensory transducer  50.7 
 
 
605 aa  239  1e-61  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.180661 
 
 
-
 
NC_011989  Avi_3647  methyl-accepting chemotaxis protein  49.32 
 
 
680 aa  238  1e-61  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0452  methyl-accepting chemotaxis protein  46.64 
 
 
622 aa  238  2e-61  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1613  methyl-accepting chemotaxis sensory transducer  51.32 
 
 
603 aa  238  2e-61  Sinorhizobium medicae WSM419  Bacteria  normal  0.183078  normal  0.160096 
 
 
-
 
NC_011368  Rleg2_5372  methyl-accepting chemotaxis sensory transducer  47.47 
 
 
627 aa  238  2e-61  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.756404 
 
 
-
 
NC_010338  Caul_3214  methyl-accepting chemotaxis sensory transducer  49.14 
 
 
532 aa  237  3e-61  Caulobacter sp. K31  Bacteria  normal  normal  0.409706 
 
 
-
 
NC_012848  Rleg_5092  methyl-accepting chemotaxis sensory transducer  47.14 
 
 
626 aa  237  3e-61  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.359668  normal  0.0114189 
 
 
-
 
NC_011989  Avi_3923  methyl-accepting chemotaxis protein  43.81 
 
 
843 aa  237  4e-61  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0563  methyl-accepting chemotaxis sensory transducer  49.49 
 
 
645 aa  236  5.0000000000000005e-61  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.73856 
 
 
-
 
NC_009636  Smed_2051  methyl-accepting chemotaxis sensory transducer  45.6 
 
 
717 aa  236  5.0000000000000005e-61  Sinorhizobium medicae WSM419  Bacteria  normal  0.245091  normal  0.347836 
 
 
-
 
NC_011989  Avi_1547  methyl-accepting chemotaxis protein  49.65 
 
 
635 aa  236  6e-61  Agrobacterium vitis S4  Bacteria  normal  0.0672502  n/a   
 
 
-
 
NC_011989  Avi_0980  methyl-accepting chemotaxis protein  41.39 
 
 
611 aa  236  6e-61  Agrobacterium vitis S4  Bacteria  normal  0.442512  n/a   
 
 
-
 
NC_009484  Acry_0520  methyl-accepting chemotaxis sensory transducer  49.83 
 
 
636 aa  236  7e-61  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_3497  putative methyl-accepting chemotaxis sensory transducer  44.03 
 
 
860 aa  235  1.0000000000000001e-60  Shewanella amazonensis SB2B  Bacteria  normal  0.19961  normal 
 
 
-
 
NC_012848  Rleg_5166  methyl-accepting chemotaxis sensory transducer  46.18 
 
 
669 aa  234  2.0000000000000002e-60  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3105  putative methyl-accepting chemotaxis sensory transducer  46.39 
 
 
767 aa  234  2.0000000000000002e-60  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0793  methyl-accepting chemotaxis protein  47.12 
 
 
740 aa  234  3e-60  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3005  methyl-accepting chemotaxis sensory transducer  47.26 
 
 
665 aa  234  3e-60  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5069  methyl-accepting chemotaxis sensory transducer  47.08 
 
 
714 aa  234  4.0000000000000004e-60  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.277036  normal 
 
 
-
 
NC_011369  Rleg2_0626  methyl-accepting chemotaxis sensory transducer with Cache sensor  47.04 
 
 
726 aa  234  4.0000000000000004e-60  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
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