Gene Avi_1547 details

Gene Information

• Locus tag: Avi_1547
• Symbol: mcpA
• ID: 7387360
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 1296606
• End bp: 1298513
• Gene Length: 1908 bp
• Protein Length: 635 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643650909
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_002549114
• Protein GI: 222148157
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0672502
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATCTGA ATTTCTCGCT CAAGACATCG CTGGCCAGCG CGTTTAGCGG CCTGATGTTG 
CTTCTTCTCC TCCAGGGTTG TTTTGCCCTG TCGTCCATGT CCGGCGTGTT TGACAATGTC 
GAGGGATTGG CGAAAGACGC GGTTCCCTCG GTGGATATTA CCAACCGCCT CAACATTTCA 
CTCGCCAATG TGCGCGGCCT CGAAATGCGC CATATCCTCA GCAAAACGCC ACAGGCCATT 
CAGGAAGCGG ACGATGCCCT GAAAACGGAA ATGCAGAAGC TGGACAAGCG GATGAAAACC 
TATGAAACGC TGATCTCGCT GCCTGAAGAG CGCAAGGCCT ATGACGCCTT CAAGCTGGCC 
ATGGTTTCTT ATGTGACGCT GCACAACCAG ATGGTGGCCT ATTCGTCCAG AGGTGAAAAG 
GACAAGGCTG CGGCCTTGCT GACCGGAGAC ATGGTCAGTG CCTATAACGC CATGGACGAA 
CAAGCCGATA TCTTCCGGGA TGCCAATGTC GATGCGGCTG GCCGCATGTA TGAAAATGCA 
GCATCAGCCT TTCAGCTGTC GCTGCTGCTG AATGGCCTGG TTCTGGCGCT GGGTGCCATT 
GCCGGTATCG GGGCGATGAT CTTTGTGTTC AAGGGCGTTT CCAACCCCAT TGAGCGGTTG 
ACCCGCGCAA TGCGGCGTCT CGCCGATGGC GACCTGAACA CCCAAGTGCT CTATCTGGAA 
CGCGGCAACG AAATCGGCGA CATGGCACGG GCGCTCGAAG TGTTCAAACA GAACGGCCTG 
CGGGTGCAGA CGATGAATGC TCAGGAACTG CATATGCGGC AAAAATCCGA TGAACTGCGC 
GACAGTATCG GTGAAGTGGT CGCCGCTGCC GTGGTCGGCG ATTTCAGCCA GCGGATCACC 
CGGGATTTCG ATTTCGAAGA TCTGAACGCC TTTGCCTCAT CCATGAACAA ATTGGTGCAG 
TCCATCGATA CCGGCCTTGG CGAGACCCGC CGCATCGTCG CCGCCCTCTC GGATGGTGAT 
CTGACCGATA CGATGCGCGG CCAGTTCCAC GGCGCGTTTG CCGAGTTGCA GCAGAATGTC 
AACGGGACGA TGTCCGCACT GCGAGGCATT GTCGGCGAAG TGCGCTCTTC CATCGACATG 
ATCAATTCCG GCTCCGGCGA ATTGCGGTTT GCCTCGGACG ATCTGGCCAA GCGCACCGAG 
CAACAGGCCG CCACCCTTGA GGAAACCTCC TCCGCATTGG AAGAAATCAC CACGGCGGTG 
CATTCCTCCA ATGATCGTGC CCAGCAGACC AGCCGCATGG TGGATGAGGC CCGCCGCAGT 
ACCGAACAAT CCGCCTCGGT CGTCCATGAC GCCGTCTCGG CCATGGGCCG GATTGAGCAA 
GCCTCCGGTG AAATCGGCAA GATCATCAAT GTCATCGACG AGATCGCCTT CCAGACCAAC 
CTGCTGGCCC TGAATGCAGG TGTCGAGGCG GCACGAGCAG GTGAAGCCGG CAAGGGTTTT 
GCCGTCGTTG CTCAGGAAGT GCGCGAATTG GCGCAACGCT CCGCAGGTGC TGCCAAGGAC 
ATCAAGTCGC TGATCACCAA ATCGGGAGAG GAAGTCAATG CAGGCGTGCG GCTCGTTACC 
GCCACCGGCG ATGCACTCTC CAAGATCCGC GATCATGTCG TGGATATCAA CGCGCAGGTG 
CATCAGATCG CCAATGCCGC CAAGGAACAA TCCTTCAAGC TGCAAGAGGT CAATTCTGCC 
GTCAGCCAGA TGGACCAGGT CACCCAACGC AATGCCGCCA TGGTGGAAGA AACCACGGCG 
AGCACCAACC AGTTGGCCGA TGACGCCCAG AACCTCGCCC GGCTGATCTC GCATTTCAAG 
CTGGAAGCTG GCGGCGCTCA ACAAAGACAG AAACGTCAGG CGGCCTGA 

 

Protein sequence

MHLNFSLKTS LASAFSGLML LLLLQGCFAL SSMSGVFDNV EGLAKDAVPS VDITNRLNIS 
LANVRGLEMR HILSKTPQAI QEADDALKTE MQKLDKRMKT YETLISLPEE RKAYDAFKLA 
MVSYVTLHNQ MVAYSSRGEK DKAAALLTGD MVSAYNAMDE QADIFRDANV DAAGRMYENA 
ASAFQLSLLL NGLVLALGAI AGIGAMIFVF KGVSNPIERL TRAMRRLADG DLNTQVLYLE 
RGNEIGDMAR ALEVFKQNGL RVQTMNAQEL HMRQKSDELR DSIGEVVAAA VVGDFSQRIT 
RDFDFEDLNA FASSMNKLVQ SIDTGLGETR RIVAALSDGD LTDTMRGQFH GAFAELQQNV 
NGTMSALRGI VGEVRSSIDM INSGSGELRF ASDDLAKRTE QQAATLEETS SALEEITTAV 
HSSNDRAQQT SRMVDEARRS TEQSASVVHD AVSAMGRIEQ ASGEIGKIIN VIDEIAFQTN 
LLALNAGVEA ARAGEAGKGF AVVAQEVREL AQRSAGAAKD IKSLITKSGE EVNAGVRLVT 
ATGDALSKIR DHVVDINAQV HQIANAAKEQ SFKLQEVNSA VSQMDQVTQR NAAMVEETTA 
STNQLADDAQ NLARLISHFK LEAGGAQQRQ KRQAA