More than 300 homologs were found in PanDaTox collection
for query gene Ssed_3197 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_3197  hypothetical protein  100 
 
 
427 aa  860    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1429  hypothetical protein  66.36 
 
 
411 aa  536  1e-151  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_001464  ABC-type transport system involved in lipoprotein release permease component  59.02 
 
 
409 aa  511  1e-144  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05401  hypothetical protein  57.65 
 
 
409 aa  488  1e-136  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_2660  hypothetical protein  60.52 
 
 
410 aa  480  1e-134  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2534  protein of unknown function DUF214  32.94 
 
 
406 aa  223  4.9999999999999996e-57  Rhodothermus marinus DSM 4252  Bacteria  normal  0.261611  n/a   
 
 
-
 
NC_007520  Tcr_0434  hypothetical protein  28.54 
 
 
425 aa  171  2e-41  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2498  hypothetical protein  28.16 
 
 
380 aa  161  2e-38  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.00553555  normal 
 
 
-
 
NC_010682  Rpic_1663  protein of unknown function DUF214  29.55 
 
 
535 aa  148  2.0000000000000003e-34  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012849  Rpic12D_5303  protein of unknown function DUF214  29.55 
 
 
830 aa  147  3e-34  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3196  hypothetical protein  27.17 
 
 
410 aa  147  5e-34  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_2374  ABC-type transport system, permease component  26.04 
 
 
409 aa  142  8e-33  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000200206  n/a   
 
 
-
 
NC_003910  CPS_5042  ABC transporter, permease protein, putative  28.64 
 
 
415 aa  142  9.999999999999999e-33  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001465  ABC-type transport system involved in lipoprotein release permease component  27.22 
 
 
411 aa  134  3.9999999999999996e-30  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_5041  putative ABC transporter, permease protein  23.89 
 
 
441 aa  130  4.0000000000000003e-29  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0435  hypothetical protein  26.24 
 
 
431 aa  129  1.0000000000000001e-28  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.131989  n/a   
 
 
-
 
NC_009784  VIBHAR_05402  hypothetical protein  25 
 
 
411 aa  126  8.000000000000001e-28  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_1430  hypothetical protein  25.47 
 
 
428 aa  122  9.999999999999999e-27  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2659  hypothetical protein  26.35 
 
 
421 aa  122  1.9999999999999998e-26  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_2373  ABC-type transport system, permease component  26.78 
 
 
407 aa  121  3e-26  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000351897  n/a   
 
 
-
 
NC_013946  Mrub_2903  hypothetical protein  29.25 
 
 
410 aa  117  3e-25  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.110934 
 
 
-
 
NC_008553  Mthe_0918  hypothetical protein  24.64 
 
 
389 aa  108  2e-22  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_011899  Hore_23240  ABC-type transport system, involved in lipoprotein release, permease component  23.36 
 
 
415 aa  107  4e-22  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2901  hypothetical protein  26.74 
 
 
411 aa  106  8e-22  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0934048 
 
 
-
 
NC_011899  Hore_23230  ABC-type transport system, involved in lipoprotein release, permease component  25.69 
 
 
419 aa  104  3e-21  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000130781  n/a   
 
 
-
 
NC_010682  Rpic_1691  protein of unknown function DUF214  25.79 
 
 
295 aa  103  8e-21  Ralstonia pickettii 12J  Bacteria  normal  0.132145  normal 
 
 
-
 
NC_013501  Rmar_2535  protein of unknown function DUF214  24.3 
 
 
412 aa  99.4  1e-19  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_23260  ABC-type transport system, involved in lipoprotein release, permease component  22.94 
 
 
419 aa  93.6  6e-18  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000978  ABC-type transport system involved in lipoprotein release permease component  26.85 
 
 
422 aa  87.4  4e-16  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_07028  efflux ABC transporter ATP-binding/permease  26.58 
 
 
422 aa  87.4  5e-16  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007643  Rru_A1578  LolC/E family lipoprotein releasing system, transmembrane protein  22.13 
 
 
417 aa  84.7  0.000000000000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0665062  n/a   
 
 
-
 
NC_008554  Sfum_2497  hypothetical protein  25.3 
 
 
422 aa  83.6  0.000000000000006  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.536779  normal 
 
 
-
 
NC_003910  CPS_3479  lipoprotein releasing system transmembrane protein LolC  24.57 
 
 
422 aa  82.4  0.00000000000001  Colwellia psychrerythraea 34H  Bacteria  normal  0.640884  n/a   
 
 
-
 
NC_011899  Hore_23270  ABC-type transport system, involved in lipoprotein release, permease component  23.66 
 
 
411 aa  82  0.00000000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2542  hypothetical protein  23.31 
 
 
441 aa  82  0.00000000000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.429279  normal  0.740963 
 
 
-
 
NC_007355  Mbar_A3444  putative ABC transporter permease protein  21.72 
 
 
389 aa  80.5  0.00000000000005  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.0182994  normal  0.122472 
 
 
-
 
NC_011899  Hore_19660  ABC-type transport system, involved in lipoprotein release, permease component  23.45 
 
 
400 aa  80.5  0.00000000000005  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2394  hypothetical protein  23.6 
 
 
406 aa  79.7  0.00000000000008  Dechloromonas aromatica RCB  Bacteria  normal  0.48898  normal  0.587335 
 
 
-
 
NC_010814  Glov_0758  lipoprotein releasing system, transmembrane protein, LolC/E family  22.91 
 
 
420 aa  79.7  0.0000000000001  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.00020569  n/a   
 
 
-
 
NC_004347  SO_2257  lipoprotein releasing system transmembrane protein LolE  23.98 
 
 
410 aa  78.6  0.0000000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010581  Bind_1796  LolC/E family lipoprotein releasing system, transmembrane protein  23.04 
 
 
439 aa  78.2  0.0000000000003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.401704  normal 
 
 
-
 
NC_012560  Avin_29500  hypothetical protein  25 
 
 
416 aa  77.8  0.0000000000003  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2233  lipoprotein releasing system, transmembrane protein, LolC/E family  22.73 
 
 
409 aa  77.4  0.0000000000004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1332  lipoprotein releasing system transmembrane protein LolE  24.01 
 
 
411 aa  77.8  0.0000000000004  Shewanella amazonensis SB2B  Bacteria  normal  0.803281  normal 
 
 
-
 
NC_009511  Swit_2346  LolC/E family lipoprotein releasing system, transmembrane protein  24.03 
 
 
416 aa  77  0.0000000000006  Sphingomonas wittichii RW1  Bacteria  normal  0.323587  normal 
 
 
-
 
NC_007520  Tcr_1172  LolC/E family lipoprotein releasing system, transmembrane protein  21.7 
 
 
416 aa  77  0.0000000000007  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0830739  n/a   
 
 
-
 
NC_008340  Mlg_1440  LolC/E family lipoprotein releasing system, transmembrane protein  22.7 
 
 
415 aa  77  0.0000000000007  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.141439  normal  0.211841 
 
 
-
 
NC_007355  Mbar_A3445  hypothetical protein  20.67 
 
 
389 aa  76.3  0.0000000000009  Methanosarcina barkeri str. Fusaro  Archaea  hitchhiker  0.000000235465  normal  0.187048 
 
 
-
 
NC_009052  Sbal_2404  LolC/E family lipoprotein releasing system, transmembrane protein  24.65 
 
 
410 aa  75.9  0.000000000001  Shewanella baltica OS155  Bacteria  normal  0.041887  n/a   
 
 
-
 
NC_009665  Shew185_2393  LolC/E family lipoprotein releasing system, transmembrane protein  24.65 
 
 
410 aa  75.9  0.000000000001  Shewanella baltica OS185  Bacteria  hitchhiker  0.000160813  n/a   
 
 
-
 
NC_007958  RPD_2864  LolC/E family lipoprotein releasing system, transmembrane protein  22.42 
 
 
422 aa  75.9  0.000000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.998701  normal  0.300269 
 
 
-
 
NC_007964  Nham_2196  LolC/E family lipoprotein releasing system, transmembrane protein  23.01 
 
 
426 aa  76.3  0.000000000001  Nitrobacter hamburgensis X14  Bacteria  decreased coverage  0.00714902  n/a   
 
 
-
 
NC_009997  Sbal195_2509  LolC/E family lipoprotein releasing system, transmembrane protein  24.04 
 
 
410 aa  76.3  0.000000000001  Shewanella baltica OS195  Bacteria  normal  0.497071  normal  0.173381 
 
 
-
 
NC_009092  Shew_1634  LolC/E family lipoprotein releasing system, transmembrane protein  25 
 
 
417 aa  75.9  0.000000000001  Shewanella loihica PV-4  Bacteria  normal  0.0870078  normal  0.876319 
 
 
-
 
NC_011663  Sbal223_1954  lipoprotein releasing system, transmembrane protein, LolC/E family  25 
 
 
410 aa  76.3  0.000000000001  Shewanella baltica OS223  Bacteria  decreased coverage  0.00124198  normal  0.0910172 
 
 
-
 
NC_011662  Tmz1t_1621  protein of unknown function DUF214  25.41 
 
 
404 aa  75.5  0.000000000002  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4227  hypothetical protein  24.71 
 
 
408 aa  75.1  0.000000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  0.405326  normal  0.650749 
 
 
-
 
NC_007519  Dde_1366  LolC/E family lipoprotein releasing system, transmembrane protein  23.53 
 
 
408 aa  74.3  0.000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.217764  n/a   
 
 
-
 
NC_007509  Bcep18194_C7413  ABC efflux pump, inner membrane subunit  23.87 
 
 
405 aa  73.9  0.000000000005  Burkholderia sp. 383  Bacteria  normal  0.155043  normal 
 
 
-
 
NC_008553  Mthe_0917  hypothetical protein  25.94 
 
 
364 aa  73.6  0.000000000006  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_012791  Vapar_1210  lipoprotein releasing system, transmembrane protein, LolC/E family  23.38 
 
 
418 aa  73.2  0.000000000007  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2598  LolC/E family lipoprotein releasing system, transmembrane protein  22.12 
 
 
426 aa  73.2  0.000000000008  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.258492  normal  0.437082 
 
 
-
 
NC_010725  Mpop_1000  lipoprotein releasing system, transmembrane protein, LolC/E family  21.19 
 
 
439 aa  73.2  0.000000000009  Methylobacterium populi BJ001  Bacteria  normal  normal  0.14096 
 
 
-
 
NC_008639  Cpha266_1098  hypothetical protein  25.13 
 
 
429 aa  72.8  0.00000000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.0142755  n/a   
 
 
-
 
NC_011365  Gdia_3344  lipoprotein releasing system, transmembrane protein, LolC/E family  22.16 
 
 
415 aa  72.4  0.00000000001  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0700  lipoprotein releasing system, transmembrane protein, LolC/E family  23.16 
 
 
423 aa  73.2  0.00000000001  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011757  Mchl_1195  lipoprotein releasing system, transmembrane protein, LolC/E family  22.03 
 
 
439 aa  72.8  0.00000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4462  LolC/E family lipoprotein releasing system, transmembrane protein  22.44 
 
 
447 aa  72.4  0.00000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  0.919983  normal  0.365763 
 
 
-
 
NC_010172  Mext_1065  LolC/E family lipoprotein releasing system, transmembrane protein  21.75 
 
 
439 aa  72  0.00000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.123078 
 
 
-
 
NC_007908  Rfer_3232  LolC/E family lipoprotein releasing system, transmembrane protein  23 
 
 
418 aa  71.6  0.00000000002  Rhodoferax ferrireducens T118  Bacteria  normal  0.215903  n/a   
 
 
-
 
NC_009483  Gura_2438  hypothetical protein  21.9 
 
 
406 aa  71.2  0.00000000003  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B0507  LolC/E family lipoprotein releasing system, transmembrane protein  22.29 
 
 
427 aa  71.2  0.00000000003  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3700  LolC/E family lipoprotein releasing system, transmembrane protein  23.28 
 
 
417 aa  70.5  0.00000000005  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.8164 
 
 
-
 
NC_007925  RPC_2428  LolC/E family lipoprotein releasing system, transmembrane protein  22.35 
 
 
426 aa  70.9  0.00000000005  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.507047  normal  0.0670699 
 
 
-
 
NC_010002  Daci_5401  LolC/E family lipoprotein releasing system, transmembrane protein  24.03 
 
 
423 aa  70.1  0.00000000006  Delftia acidovorans SPH-1  Bacteria  normal  0.117898  normal 
 
 
-
 
NC_007614  Nmul_A0370  hypothetical protein  23.95 
 
 
409 aa  70.5  0.00000000006  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2397  lipoprotein releasing system, transmembrane protein, LolC/E family protein  23.28 
 
 
414 aa  70.1  0.00000000006  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.218063  n/a   
 
 
-
 
NC_007355  Mbar_A0790  putative ABC transporter permease protein  24.32 
 
 
371 aa  70.1  0.00000000007  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.119405 
 
 
-
 
NC_010622  Bphy_1446  LolC/E family lipoprotein releasing system, transmembrane protein  23.95 
 
 
417 aa  69.7  0.00000000008  Burkholderia phymatum STM815  Bacteria  normal  0.644445  normal 
 
 
-
 
NC_010814  Glov_1801  protein of unknown function DUF214  24.13 
 
 
412 aa  69.7  0.00000000009  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0641  lipoprotein releasing system, transmembrane protein, LolC/E family  21.64 
 
 
414 aa  69.7  0.0000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.256103  normal 
 
 
-
 
NC_007406  Nwi_1864  LolC/E family lipoprotein releasing system, transmembrane protein  22.42 
 
 
426 aa  69.7  0.0000000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.172929  normal  0.0361846 
 
 
-
 
NC_010730  SYO3AOP1_1577  protein of unknown function DUF214  21.11 
 
 
401 aa  69.3  0.0000000001  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.340093  n/a   
 
 
-
 
NC_013173  Dbac_3383  lipoprotein releasing system, transmembrane protein, LolC/E family  20.65 
 
 
409 aa  69.3  0.0000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A0369  hypothetical protein  26.96 
 
 
403 aa  69.3  0.0000000001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0481  lipoprotein releasing system transmembrane protein LolC  21.64 
 
 
414 aa  69.7  0.0000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_0940  LolC/E family lipoprotein releasing system, transmembrane protein  20.38 
 
 
415 aa  69.3  0.0000000001  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2040  LolC/E family lipoprotein releasing system, transmembrane protein  21.01 
 
 
436 aa  68.9  0.0000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.489126  normal 
 
 
-
 
NC_007404  Tbd_1761  LolC/E family lipoprotein releasing system, transmembrane protein  22.63 
 
 
414 aa  68.9  0.0000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.293206  normal 
 
 
-
 
NC_008740  Maqu_1747  LolC/E family lipoprotein releasing system, transmembrane protein  22.63 
 
 
414 aa  68.9  0.0000000002  Marinobacter aquaeolei VT8  Bacteria  normal  0.726619  n/a   
 
 
-
 
NC_007794  Saro_1765  LolC/E family lipoprotein releasing system, transmembrane protein  21.41 
 
 
413 aa  68.6  0.0000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.157209  n/a   
 
 
-
 
NC_007954  Sden_1676  LolC/E family lipoprotein releasing system, transmembrane protein  24.93 
 
 
411 aa  68.9  0.0000000002  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000000596735  n/a   
 
 
-
 
NC_010511  M446_4409  LolC/E family lipoprotein releasing system, transmembrane protein  23.74 
 
 
433 aa  68.9  0.0000000002  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.452061 
 
 
-
 
NC_009456  VC0395_0383  hypothetical protein  26.52 
 
 
419 aa  67.8  0.0000000004  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2669  LolC/E family lipoprotein releasing system, transmembrane protein  20.57 
 
 
415 aa  67.8  0.0000000004  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3423  lipoprotein releasing system, transmembrane protein, LolC/E family  22.28 
 
 
416 aa  67.8  0.0000000004  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007954  Sden_1678  LolC/E family lipoprotein releasing system, transmembrane protein  24.71 
 
 
421 aa  67.4  0.0000000005  Shewanella denitrificans OS217  Bacteria  normal  0.0156822  n/a   
 
 
-
 
NC_008786  Veis_2530  hypothetical protein  25 
 
 
407 aa  67.4  0.0000000005  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0995274  normal 
 
 
-
 
NC_007798  NSE_0137  putative permease  21.23 
 
 
407 aa  67  0.0000000006  Neorickettsia sennetsu str. Miyayama  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3275  lipoprotein releasing system, transmembrane protein, LolC/E family  21.53 
 
 
422 aa  67  0.0000000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.314483  n/a   
 
 
-
 
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