| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3196 |
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| Symbol | |
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| ID | 5612082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3854404 |
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| End bp | 3855636 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934134 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474928 |
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| Protein GI | 157376328 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAATTA AACTGGCTTG GCGTAACCTA TGGCGCAATA AATTACGCAC CTCGATCATG
TTGTCCGCGA TGGCTTTTGG CTTAATTGGT GTCGTTACCA TGATAGGTTT TATGAACGGT
ATGTATGGCA ATATGATCGA CAATGCCATC TCCTGGCAGA CCAGCCATGT TCAGGTTCAT
CATCAAGGTT TTGTCGATAA CCCGGAAATT AATCTGACCA TTGTTGAGCC TGAGCGGATC
ACTGCCGAGC TGGAGAGAAT GAGTGAAGTC ATCGCCTGGT CTGAGCGATT TATTGTCGAT
GGCATGGTGG CCTCGGCGCG GTCATCCCGC GGTGTGCGGG TCAATGGTGT CGATATCGAC
GCAGAAGCCA GGGTGACACC GATAGCTTCA AGCGTTAAAG AGGGCAGTTG GTTACCAGCA
GAAGGGCGCC ATCCTGTCGT GGTGTCATCA AAAACGGCAC AACGCCTGCG GTTAAAGTTA
GGCTCTAAGG TCGTGATCAC CTTCAGTGAT GCAGACAAAG ATGTCACAGG TGCAGCCTTC
AGAGTTTCAG GTATTTTCAG CACCCCCTCC ACTAGTTTCG ACGATGGCAA TATCTATGTG
AGGCGATCCG ATCTGATTGC TATGGCAGGT ATTGAAGGCA GTCATGAGAT AGCTGTGTTA
CTCGATGACA GCAACAGCAT GTCAAATGCC TTAGCAGTCA TGGTGAGGGA CAAAATCCGG
TTAATCACCT CTAATGAGAA CAACGTCAGA GACTGGCAGC AGATACAACC TATGTTGGCG
TCAATTATCG CTCAGATGGG ACCGAGTAAT GCCATCTTAC TGGGCATATT TGTCTCAGCC
ATGGGGTTTG GCGTGGTCAA TATCATGTTG ATGTCTGTGT TTGAGAGAAC CAGAGAGTTT
GGGGTGTTGA TGGCGGTGGG TATGCAGAAG CATAAGGTGT TTGCACTGAT TATATTTGAG
ACTAGCCTGC TTGGTGTAAC AGGAGCAACC ATAGGACTGG TGTCCAGCTT AGCTTTAGTA
GAGCTGTTGC AAATTACCGG TATTCCTCTG GGTAATATGG CGGAAGGCTT GGGCGCATTT
GGTGTCGATA CCACACTGTA TCCGCAGGTC GCCGCTAGCG AGTATCGTTA CATCTTTATT
ACTGTGGTGC TGGTCTGCGT GTTAGCGGCC CTGTACCCGG CGAGGCAGAT TTTGAAACAA
CGCCCTGTCG ATGCCATGGC TGAAAAGCAT TGA
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| Protein sequence | MLIKLAWRNL WRNKLRTSIM LSAMAFGLIG VVTMIGFMNG MYGNMIDNAI SWQTSHVQVH
HQGFVDNPEI NLTIVEPERI TAELERMSEV IAWSERFIVD GMVASARSSR GVRVNGVDID
AEARVTPIAS SVKEGSWLPA EGRHPVVVSS KTAQRLRLKL GSKVVITFSD ADKDVTGAAF
RVSGIFSTPS TSFDDGNIYV RRSDLIAMAG IEGSHEIAVL LDDSNSMSNA LAVMVRDKIR
LITSNENNVR DWQQIQPMLA SIIAQMGPSN AILLGIFVSA MGFGVVNIML MSVFERTREF
GVLMAVGMQK HKVFALIIFE TSLLGVTGAT IGLVSSLALV ELLQITGIPL GNMAEGLGAF
GVDTTLYPQV AASEYRYIFI TVVLVCVLAA LYPARQILKQ RPVDAMAEKH
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