More than 300 homologs were found in PanDaTox collection
for query gene Tcr_0435 on replicon NC_007520
Organism: Thiomicrospira crunogena XCL-2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007520  Tcr_0435  hypothetical protein  100 
 
 
431 aa  877    Thiomicrospira crunogena XCL-2  Bacteria  normal  0.131989  n/a   
 
 
-
 
NC_003910  CPS_5042  ABC transporter, permease protein, putative  30.57 
 
 
415 aa  183  5.0000000000000004e-45  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2497  hypothetical protein  30.63 
 
 
422 aa  180  4.999999999999999e-44  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.536779  normal 
 
 
-
 
NC_007498  Pcar_2373  ABC-type transport system, permease component  31.93 
 
 
407 aa  170  5e-41  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000351897  n/a   
 
 
-
 
NC_007498  Pcar_2374  ABC-type transport system, permease component  29.43 
 
 
409 aa  166  5e-40  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000200206  n/a   
 
 
-
 
NC_013457  VEA_001465  ABC-type transport system involved in lipoprotein release permease component  28.71 
 
 
411 aa  166  1.0000000000000001e-39  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3196  hypothetical protein  26.97 
 
 
410 aa  164  3e-39  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2659  hypothetical protein  29.58 
 
 
421 aa  163  5.0000000000000005e-39  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2534  protein of unknown function DUF214  28.03 
 
 
406 aa  160  3e-38  Rhodothermus marinus DSM 4252  Bacteria  normal  0.261611  n/a   
 
 
-
 
NC_007520  Tcr_0434  hypothetical protein  26.73 
 
 
425 aa  155  1e-36  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_5041  putative ABC transporter, permease protein  27.61 
 
 
441 aa  148  2.0000000000000003e-34  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1430  hypothetical protein  28.33 
 
 
428 aa  147  4.0000000000000006e-34  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_012849  Rpic12D_5303  protein of unknown function DUF214  27.4 
 
 
830 aa  142  9.999999999999999e-33  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05402  hypothetical protein  26.93 
 
 
411 aa  142  9.999999999999999e-33  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009784  VIBHAR_05401  hypothetical protein  27.29 
 
 
409 aa  142  9.999999999999999e-33  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010682  Rpic_1663  protein of unknown function DUF214  30.58 
 
 
535 aa  140  3e-32  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_001464  ABC-type transport system involved in lipoprotein release permease component  27.27 
 
 
409 aa  136  8e-31  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2498  hypothetical protein  27.89 
 
 
380 aa  122  8e-27  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.00553555  normal 
 
 
-
 
NC_009831  Ssed_3197  hypothetical protein  26.24 
 
 
427 aa  119  7.999999999999999e-26  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1801  protein of unknown function DUF214  24.71 
 
 
412 aa  117  3e-25  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1429  hypothetical protein  26.13 
 
 
411 aa  117  5e-25  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2660  hypothetical protein  26.14 
 
 
410 aa  111  2.0000000000000002e-23  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1691  protein of unknown function DUF214  28.53 
 
 
295 aa  110  4.0000000000000004e-23  Ralstonia pickettii 12J  Bacteria  normal  0.132145  normal 
 
 
-
 
NC_011662  Tmz1t_1621  protein of unknown function DUF214  24.93 
 
 
404 aa  108  1e-22  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_23230  ABC-type transport system, involved in lipoprotein release, permease component  22.12 
 
 
419 aa  108  2e-22  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000130781  n/a   
 
 
-
 
NC_008553  Mthe_0918  hypothetical protein  22.99 
 
 
389 aa  104  4e-21  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_013501  Rmar_2535  protein of unknown function DUF214  27.34 
 
 
412 aa  103  9e-21  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A0369  hypothetical protein  23.89 
 
 
403 aa  101  3e-20  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_0224  lipoprotein releasing system, transmembrane protein, LolC/E family  22.43 
 
 
415 aa  100  7e-20  Halothiobacillus neapolitanus c2  Bacteria  normal  0.0374875  n/a   
 
 
-
 
NC_013512  Sdel_2020  protein of unknown function DUF214  23.71 
 
 
411 aa  100  7e-20  Sulfurospirillum deleyianum DSM 6946  Bacteria  decreased coverage  0.00000619382  n/a   
 
 
-
 
NC_007298  Daro_2394  hypothetical protein  26.65 
 
 
406 aa  98.2  2e-19  Dechloromonas aromatica RCB  Bacteria  normal  0.48898  normal  0.587335 
 
 
-
 
NC_008639  Cpha266_1098  hypothetical protein  24.45 
 
 
429 aa  97.8  3e-19  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.0142755  n/a   
 
 
-
 
NC_008786  Veis_2530  hypothetical protein  24.65 
 
 
407 aa  96.3  9e-19  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0995274  normal 
 
 
-
 
NC_011899  Hore_23260  ABC-type transport system, involved in lipoprotein release, permease component  24.72 
 
 
419 aa  96.3  1e-18  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2901  hypothetical protein  25.3 
 
 
411 aa  94.4  4e-18  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0934048 
 
 
-
 
NC_008609  Ppro_3015  LolC/E family lipoprotein releasing system, transmembrane protein  22.29 
 
 
420 aa  93.2  8e-18  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1446  LolC/E family lipoprotein releasing system, transmembrane protein  21.98 
 
 
417 aa  92.4  1e-17  Burkholderia phymatum STM815  Bacteria  normal  0.644445  normal 
 
 
-
 
NC_013889  TK90_1199  lipoprotein releasing system, transmembrane protein, LolC/E family  20.77 
 
 
416 aa  92.4  1e-17  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.132324 
 
 
-
 
NC_013946  Mrub_2903  hypothetical protein  25 
 
 
410 aa  91.7  2e-17  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.110934 
 
 
-
 
NC_007951  Bxe_A1566  ABC lipoprotein efflux pump, inner membrane subunit  23.75 
 
 
417 aa  91.7  2e-17  Burkholderia xenovorans LB400  Bacteria  normal  0.764315  normal  0.414868 
 
 
-
 
NC_010681  Bphyt_2567  lipoprotein releasing system, transmembrane protein, LolC/E family  24.05 
 
 
417 aa  92  2e-17  Burkholderia phytofirmans PsJN  Bacteria  normal  0.178921  normal  0.0571791 
 
 
-
 
NC_010084  Bmul_1156  LolC/E family lipoprotein releasing system, transmembrane protein  23.2 
 
 
417 aa  90.9  4e-17  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.342008  normal  0.0203303 
 
 
-
 
NC_007510  Bcep18194_A5420  LolC/E family lipoprotein releasing system, transmembrane protein  22.76 
 
 
417 aa  89.7  9e-17  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1040  LolC/E family lipoprotein releasing system, transmembrane protein  21.31 
 
 
416 aa  89.4  1e-16  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.678846 
 
 
-
 
NC_008062  Bcen_5963  LolC/E family lipoprotein releasing system, transmembrane protein  22.64 
 
 
417 aa  89.4  1e-16  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.28938  n/a   
 
 
-
 
NC_008542  Bcen2424_2114  LolC/E family lipoprotein releasing system, transmembrane protein  22.64 
 
 
417 aa  89.4  1e-16  Burkholderia cenocepacia HI2424  Bacteria  normal  0.08589  n/a   
 
 
-
 
NC_010508  Bcenmc03_2132  LolC/E family lipoprotein releasing system, transmembrane protein  22.22 
 
 
417 aa  88.6  2e-16  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.435353  normal  0.150883 
 
 
-
 
NC_010551  BamMC406_2024  LolC/E family lipoprotein releasing system, transmembrane protein  22.64 
 
 
417 aa  88.2  2e-16  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.329575 
 
 
-
 
NC_009456  VC0395_0383  hypothetical protein  24.8 
 
 
419 aa  88.6  2e-16  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1887  lipoprotein releasing system transmembrane protein, putative  23.51 
 
 
448 aa  88.2  2e-16  Burkholderia thailandensis E264  Bacteria  normal  0.358126  n/a   
 
 
-
 
NC_011901  Tgr7_1365  lipoprotein releasing system, transmembrane protein, LolC/E family  21.28 
 
 
415 aa  88.2  3e-16  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2639  LolC/E family lipoprotein releasing system, transmembrane protein  23.55 
 
 
417 aa  87.8  3e-16  Burkholderia pseudomallei 1106a  Bacteria  normal  0.795007  n/a   
 
 
-
 
NC_009074  BURPS668_2584  LolC/E family lipoprotein releasing system, transmembrane protein  23.55 
 
 
417 aa  87.8  3e-16  Burkholderia pseudomallei 668  Bacteria  normal  0.297179  n/a   
 
 
-
 
NC_008390  Bamb_2151  LolC/E family lipoprotein releasing system, transmembrane protein  22.91 
 
 
417 aa  87.8  3e-16  Burkholderia ambifaria AMMD  Bacteria  normal  0.0738534  n/a   
 
 
-
 
NC_012918  GM21_3423  lipoprotein releasing system, transmembrane protein, LolC/E family  22.25 
 
 
416 aa  87  6e-16  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008836  BMA10229_A3117  putative lipoprotein releasing system transmembrane protein  23.55 
 
 
417 aa  86.7  8e-16  Burkholderia mallei NCTC 10229  Bacteria  normal  0.139824  n/a   
 
 
-
 
NC_006348  BMA1696  lipoprotein releasing system transmembrane protein, putative  23.55 
 
 
417 aa  86.7  8e-16  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2201  putative lipoprotein releasing system transmembrane protein  23.55 
 
 
417 aa  86.7  8e-16  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2718  lipoprotein releasing system transmembrane protein, putative  23.55 
 
 
417 aa  86.7  8e-16  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1474  putative lipoprotein releasing system transmembrane protein  23.55 
 
 
417 aa  86.7  8e-16  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1622  protein of unknown function DUF214  24.71 
 
 
413 aa  85.9  0.000000000000001  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1761  LolC/E family lipoprotein releasing system, transmembrane protein  21.79 
 
 
414 aa  86.3  0.000000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.293206  normal 
 
 
-
 
NC_008061  Bcen_3231  LolC/E family lipoprotein releasing system, transmembrane protein  22.79 
 
 
422 aa  85.9  0.000000000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.113164  n/a   
 
 
-
 
NC_008543  Bcen2424_5136  LolC/E family lipoprotein releasing system, transmembrane protein  22.79 
 
 
422 aa  85.9  0.000000000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  0.433144  normal 
 
 
-
 
NC_002939  GSU2270  ABC transporter, permease protein  20.18 
 
 
423 aa  85.5  0.000000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5146  LolC/E family lipoprotein releasing system, transmembrane protein  22.19 
 
 
417 aa  85.5  0.000000000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_07028  efflux ABC transporter ATP-binding/permease  25.83 
 
 
422 aa  85.5  0.000000000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011146  Gbem_0837  lipoprotein releasing system, transmembrane protein, LolC/E family  21.24 
 
 
416 aa  84.3  0.000000000000004  Geobacter bemidjiensis Bem  Bacteria  normal  0.0822431  n/a   
 
 
-
 
NC_008752  Aave_3700  LolC/E family lipoprotein releasing system, transmembrane protein  22.01 
 
 
417 aa  83.6  0.000000000000006  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.8164 
 
 
-
 
NC_012791  Vapar_1210  lipoprotein releasing system, transmembrane protein, LolC/E family  21.97 
 
 
418 aa  83.6  0.000000000000006  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A3445  hypothetical protein  20.57 
 
 
389 aa  82.4  0.00000000000001  Methanosarcina barkeri str. Fusaro  Archaea  hitchhiker  0.000000235465  normal  0.187048 
 
 
-
 
NC_013457  VEA_000978  ABC-type transport system involved in lipoprotein release permease component  24.52 
 
 
422 aa  82.4  0.00000000000001  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0758  lipoprotein releasing system, transmembrane protein, LolC/E family  21.72 
 
 
420 aa  82.4  0.00000000000001  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.00020569  n/a   
 
 
-
 
NC_009457  VC0395_A1472  outer membrane-specific lipoprotein transporter subunit LolE  23.94 
 
 
414 aa  82.4  0.00000000000001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1117  lipoprotein releasing system transmembrane  22.12 
 
 
416 aa  82  0.00000000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0172186  normal  0.243011 
 
 
-
 
NC_010581  Bind_1796  LolC/E family lipoprotein releasing system, transmembrane protein  21.78 
 
 
439 aa  81.6  0.00000000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.401704  normal 
 
 
-
 
NC_007908  Rfer_3232  LolC/E family lipoprotein releasing system, transmembrane protein  22.52 
 
 
418 aa  82  0.00000000000002  Rhodoferax ferrireducens T118  Bacteria  normal  0.215903  n/a   
 
 
-
 
NC_009483  Gura_2438  hypothetical protein  22.95 
 
 
406 aa  81.6  0.00000000000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2395  hypothetical protein  22.93 
 
 
404 aa  81.6  0.00000000000003  Dechloromonas aromatica RCB  Bacteria  normal  0.111806  normal  0.574816 
 
 
-
 
NC_007947  Mfla_2095  LolC/E family lipoprotein releasing system, transmembrane protein  21.93 
 
 
421 aa  81.3  0.00000000000003  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.00459774  normal 
 
 
-
 
NC_010524  Lcho_2398  LolC/E family lipoprotein releasing system, transmembrane protein  23.91 
 
 
418 aa  81.6  0.00000000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008789  Hhal_1252  LolC/E family lipoprotein releasing system, transmembrane protein  19.46 
 
 
414 aa  80.5  0.00000000000006  Halorhodospira halophila SL1  Bacteria  normal  0.368874  n/a   
 
 
-
 
NC_009483  Gura_3239  LolC/E family lipoprotein releasing system, transmembrane protein  20.85 
 
 
424 aa  80.1  0.00000000000007  Geobacter uraniireducens Rf4  Bacteria  normal  0.0892821  n/a   
 
 
-
 
NC_011761  AFE_0481  lipoprotein releasing system transmembrane protein LolC  24.47 
 
 
414 aa  80.1  0.00000000000008  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_29500  hypothetical protein  25.27 
 
 
416 aa  80.1  0.00000000000008  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0641  lipoprotein releasing system, transmembrane protein, LolC/E family  24.47 
 
 
414 aa  80.1  0.00000000000008  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.256103  normal 
 
 
-
 
NC_007614  Nmul_A2509  LolC/E family lipoprotein releasing system, transmembrane protein  21.46 
 
 
414 aa  79.7  0.0000000000001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.418191  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0938  LolC/E family lipoprotein releasing system, transmembrane protein  21.2 
 
 
414 aa  79  0.0000000000001  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_1046  lipoprotein releasing system transmembrane protein  21.2 
 
 
414 aa  79  0.0000000000001  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2748  putative lipoprotein releasing system transmembrane  21.81 
 
 
418 aa  79.3  0.0000000000001  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1986  lipoprotein releasing system, transmembrane protein, LolC/E family  21.91 
 
 
418 aa  78.2  0.0000000000002  Thauera sp. MZ1T  Bacteria  normal  0.914701  n/a   
 
 
-
 
NC_007355  Mbar_A3010  ABC transporter, permease protein  25.08 
 
 
414 aa  78.2  0.0000000000002  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.0102949  hitchhiker  0.00186023 
 
 
-
 
NC_007511  Bcep18194_B0507  LolC/E family lipoprotein releasing system, transmembrane protein  22.22 
 
 
427 aa  78.2  0.0000000000003  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2359  LolC/E family lipoprotein releasing system, transmembrane protein  20.13 
 
 
423 aa  78.2  0.0000000000003  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0960  lipoprotein releasing system, transmembrane protein, LolC/E family  21.75 
 
 
416 aa  76.6  0.0000000000007  Ralstonia pickettii 12J  Bacteria  normal  0.100135  normal  0.0249332 
 
 
-
 
NC_012856  Rpic12D_1056  lipoprotein releasing system, transmembrane protein, LolC/E family  21.75 
 
 
416 aa  76.6  0.0000000000009  Ralstonia pickettii 12D  Bacteria  normal  0.530836  normal  0.504254 
 
 
-
 
NC_002977  MCA2624  lipoprotein ABC transporter, permease protein LolE  19.48 
 
 
415 aa  76.3  0.000000000001  Methylococcus capsulatus str. Bath  Bacteria  normal  0.857684  n/a   
 
 
-
 
NC_007355  Mbar_A3444  putative ABC transporter permease protein  22.25 
 
 
389 aa  75.9  0.000000000001  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.0182994  normal  0.122472 
 
 
-
 
NC_007520  Tcr_1172  LolC/E family lipoprotein releasing system, transmembrane protein  23.36 
 
 
416 aa  75.5  0.000000000002  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0830739  n/a   
 
 
-
 
NC_011992  Dtpsy_2755  lipoprotein releasing system, transmembrane protein, LolC/E family  20.38 
 
 
417 aa  75.5  0.000000000002  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
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