| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_5042 |
|---|
| Symbol | |
|---|
| ID | 3521071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 5360607 |
|---|
| End bp | 5361854 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637287481 |
|---|
| Product | ABC transporter, permease protein, putative |
|---|
| Protein accession | YP_271680 |
|---|
| Protein GI | 71280603 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGATAG TAAAACTTGC CTTTAGGAAC ATATTACGTA ATCGACGCCG TTCATTGTTA
ACATTATTGA GCATGGGTGG CGGCTTTTTT TTACTTTGCC TAACTCTCTC TATGTCAGAG
GGAAGTTATA GCAACATTAT TAATATATTT ACCCAAGATC ACACCGGGCA TGTGCAAATT
CATAAAGAAA ACTACCTAGA GCGCCCTTCT CTATACAAAA CGATCAATCA TGCTGATGAG
ATCATTACTC TATTAGAGCA AAAAACACTG GTATTAGGTG TTGCGCCACG AATTTATAGT
CCTTCTTTAG CTTACGGCAA GAATAAAACT TTTCCAGCTC AGGTTATTGG TATTGATCCC
GAGCGAGAAG CTAAAACCAC AGGGTTAGAT AATAAAGTTA ACGAGGGATA TTATTTAACA
AGACCGTTGG CCAATAAAAT AAGTAAGGAT GCTTATTTTC CCGCCATGAT CGGCTTTAGT
CTAGCTAAAA ACTTACAGCT TACAGTTGGT GACGAACTGG TACTCATTTC TCAAGGTATT
GATGGCTCTA TCGCCAATGA TATTTTTAAT GTCGTTGCTA TTGTGGGTGA TGCTAGCTCA
TATGAACGTA TGAATGTTTA TATTAGCTTA ACAGCCATGC GAGAGTTTTT ATCAATGGCA
GGTGATACCA GTAAAGTTCA CGAATTAGCG TTAATTTTAT CGAGTCAAAG CCAAGCAAGG
GAATTCGCTG CTAAAACTCA ATCAGCGCTT AAAGATGAGA GCTTAAGTGT AGAACCATGG
CAAGTGGTTG AATCCTCTTT TTATAAGAGT ATGCAAGCGG ATAAAAAAGG CAGTTATGTC
TCTATGGGCA TTATTATATT TATCGTCTCA ATAGGCGTAT TAAATACCAT CTTAATGGGC
ACCATGGAGC GAACCCGCGA GTTTGGCGTT TTGAAGGCTA TTGGAACTCG GCCTTTAGCG
GTTTTTACCT TAATAATGTT AGAGTCTTTT GTACTGGCTA TTATCGGTTG TTTACTTGGA
TTGCTACTCG CGCTACCTGT TTGTTTTTGG CTGGCAGGTG TTGGTATCTC TATGCCAGAG
CCAATAGATA TGGGCGGGAT TATATTTGAT ACCATGCTAG GAGAAGTAAG CTGGTTTGTA
GTGTTATTAC CCTCAATTGT TGTTATTAGT AGTACGTTAA TCGTTAGTTT TATTCCTGCG
ATTCGGGCAG CTAAAATATC ACCGTTAAAA GCATTACAGG CGGTTTAA
|
|---|
| Protein sequence | MLIVKLAFRN ILRNRRRSLL TLLSMGGGFF LLCLTLSMSE GSYSNIINIF TQDHTGHVQI
HKENYLERPS LYKTINHADE IITLLEQKTL VLGVAPRIYS PSLAYGKNKT FPAQVIGIDP
EREAKTTGLD NKVNEGYYLT RPLANKISKD AYFPAMIGFS LAKNLQLTVG DELVLISQGI
DGSIANDIFN VVAIVGDASS YERMNVYISL TAMREFLSMA GDTSKVHELA LILSSQSQAR
EFAAKTQSAL KDESLSVEPW QVVESSFYKS MQADKKGSYV SMGIIIFIVS IGVLNTILMG
TMERTREFGV LKAIGTRPLA VFTLIMLESF VLAIIGCLLG LLLALPVCFW LAGVGISMPE
PIDMGGIIFD TMLGEVSWFV VLLPSIVVIS STLIVSFIPA IRAAKISPLK ALQAV
|
|---|
| |