More than 300 homologs were found in PanDaTox collection
for query gene CPS_5041 on replicon NC_003910
Organism: Colwellia psychrerythraea 34H



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003910  CPS_5041  putative ABC transporter, permease protein  100 
 
 
441 aa  898    Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_012849  Rpic12D_5303  protein of unknown function DUF214  29.37 
 
 
830 aa  177  3e-43  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_001465  ABC-type transport system involved in lipoprotein release permease component  28.74 
 
 
411 aa  171  2e-41  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2373  ABC-type transport system, permease component  29.46 
 
 
407 aa  165  1.0000000000000001e-39  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000351897  n/a   
 
 
-
 
NC_007520  Tcr_0434  hypothetical protein  29.53 
 
 
425 aa  163  4.0000000000000004e-39  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2374  ABC-type transport system, permease component  29.56 
 
 
409 aa  159  1e-37  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000200206  n/a   
 
 
-
 
NC_009831  Ssed_3196  hypothetical protein  27.74 
 
 
410 aa  157  3e-37  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_5042  ABC transporter, permease protein, putative  29.19 
 
 
415 aa  149  7e-35  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05402  hypothetical protein  27.54 
 
 
411 aa  148  2.0000000000000003e-34  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_1430  hypothetical protein  25.71 
 
 
428 aa  147  4.0000000000000006e-34  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2498  hypothetical protein  27.86 
 
 
380 aa  145  1e-33  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.00553555  normal 
 
 
-
 
NC_013501  Rmar_2535  protein of unknown function DUF214  30.59 
 
 
412 aa  144  4e-33  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1663  protein of unknown function DUF214  26.61 
 
 
535 aa  142  9.999999999999999e-33  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_0435  hypothetical protein  27.61 
 
 
431 aa  140  6e-32  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.131989  n/a   
 
 
-
 
NC_010682  Rpic_1691  protein of unknown function DUF214  30.38 
 
 
295 aa  137  3.0000000000000003e-31  Ralstonia pickettii 12J  Bacteria  normal  0.132145  normal 
 
 
-
 
NC_009092  Shew_2659  hypothetical protein  28.66 
 
 
421 aa  134  3e-30  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_001464  ABC-type transport system involved in lipoprotein release permease component  27.65 
 
 
409 aa  132  1.0000000000000001e-29  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05401  hypothetical protein  26.18 
 
 
409 aa  128  2.0000000000000002e-28  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013946  Mrub_2901  hypothetical protein  29.31 
 
 
411 aa  117  3e-25  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0934048 
 
 
-
 
NC_009831  Ssed_3197  hypothetical protein  24.13 
 
 
427 aa  117  3.9999999999999997e-25  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2394  hypothetical protein  26.78 
 
 
406 aa  117  5e-25  Dechloromonas aromatica RCB  Bacteria  normal  0.48898  normal  0.587335 
 
 
-
 
NC_010506  Swoo_1429  hypothetical protein  26.3 
 
 
411 aa  115  1.0000000000000001e-24  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2534  protein of unknown function DUF214  24.4 
 
 
406 aa  113  8.000000000000001e-24  Rhodothermus marinus DSM 4252  Bacteria  normal  0.261611  n/a   
 
 
-
 
NC_010814  Glov_1801  protein of unknown function DUF214  24.88 
 
 
412 aa  111  2.0000000000000002e-23  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1622  protein of unknown function DUF214  25.43 
 
 
413 aa  108  2e-22  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0758  lipoprotein releasing system, transmembrane protein, LolC/E family  22.65 
 
 
420 aa  104  3e-21  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.00020569  n/a   
 
 
-
 
NC_007511  Bcep18194_B0507  LolC/E family lipoprotein releasing system, transmembrane protein  24.47 
 
 
427 aa  103  6e-21  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1761  LolC/E family lipoprotein releasing system, transmembrane protein  26.24 
 
 
414 aa  103  8e-21  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.293206  normal 
 
 
-
 
NC_008554  Sfum_2497  hypothetical protein  24.61 
 
 
422 aa  103  8e-21  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.536779  normal 
 
 
-
 
NC_013512  Sdel_2020  protein of unknown function DUF214  27.14 
 
 
411 aa  102  1e-20  Sulfurospirillum deleyianum DSM 6946  Bacteria  decreased coverage  0.00000619382  n/a   
 
 
-
 
NC_011662  Tmz1t_1621  protein of unknown function DUF214  25.36 
 
 
404 aa  102  1e-20  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5146  LolC/E family lipoprotein releasing system, transmembrane protein  23.82 
 
 
417 aa  101  2e-20  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3231  LolC/E family lipoprotein releasing system, transmembrane protein  24.24 
 
 
422 aa  102  2e-20  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.113164  n/a   
 
 
-
 
NC_008543  Bcen2424_5136  LolC/E family lipoprotein releasing system, transmembrane protein  24.24 
 
 
422 aa  102  2e-20  Burkholderia cenocepacia HI2424  Bacteria  normal  0.433144  normal 
 
 
-
 
NC_009092  Shew_2660  hypothetical protein  24.7 
 
 
410 aa  100  4e-20  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2270  ABC transporter, permease protein  23.6 
 
 
423 aa  99.4  1e-19  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0384  lipoprotein releasing system transmembrane protein  27.13 
 
 
413 aa  99  2e-19  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0348  LolC/E family lipoprotein releasing system, transmembrane protein  26.83 
 
 
413 aa  97.1  6e-19  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3239  LolC/E family lipoprotein releasing system, transmembrane protein  23.25 
 
 
424 aa  96.3  1e-18  Geobacter uraniireducens Rf4  Bacteria  normal  0.0892821  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0938  LolC/E family lipoprotein releasing system, transmembrane protein  25.8 
 
 
414 aa  95.1  2e-18  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A0370  hypothetical protein  26.11 
 
 
409 aa  95.1  2e-18  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_1046  lipoprotein releasing system transmembrane protein  25.8 
 
 
414 aa  95.1  2e-18  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_3700  LolC/E family lipoprotein releasing system, transmembrane protein  21.65 
 
 
417 aa  94.4  3e-18  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.8164 
 
 
-
 
NC_012918  GM21_3423  lipoprotein releasing system, transmembrane protein, LolC/E family  21.39 
 
 
416 aa  94.7  3e-18  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007973  Rmet_1040  LolC/E family lipoprotein releasing system, transmembrane protein  23.44 
 
 
416 aa  94.7  3e-18  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.678846 
 
 
-
 
NC_013223  Dret_2233  lipoprotein releasing system, transmembrane protein, LolC/E family  23.89 
 
 
409 aa  94.4  3e-18  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1541  lipoprotein releasing system, transmembrane protein, LolC/E family  26.2 
 
 
413 aa  94.4  4e-18  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.470748  normal  0.399061 
 
 
-
 
NC_011206  Lferr_0641  lipoprotein releasing system, transmembrane protein, LolC/E family  26.3 
 
 
414 aa  94  4e-18  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.256103  normal 
 
 
-
 
NC_011761  AFE_0481  lipoprotein releasing system transmembrane protein LolC  26.3 
 
 
414 aa  94  4e-18  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_3015  LolC/E family lipoprotein releasing system, transmembrane protein  23.5 
 
 
420 aa  94  5e-18  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_0224  lipoprotein releasing system, transmembrane protein, LolC/E family  23.21 
 
 
415 aa  93.6  7e-18  Halothiobacillus neapolitanus c2  Bacteria  normal  0.0374875  n/a   
 
 
-
 
NC_009901  Spea_1545  LolC/E family lipoprotein releasing system, transmembrane protein  27.49 
 
 
407 aa  93.2  8e-18  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0135691  n/a   
 
 
-
 
NC_011146  Gbem_0837  lipoprotein releasing system, transmembrane protein, LolC/E family  21.9 
 
 
416 aa  93.2  9e-18  Geobacter bemidjiensis Bem  Bacteria  normal  0.0822431  n/a   
 
 
-
 
NC_007298  Daro_2395  hypothetical protein  24.61 
 
 
404 aa  92.8  9e-18  Dechloromonas aromatica RCB  Bacteria  normal  0.111806  normal  0.574816 
 
 
-
 
NC_007517  Gmet_2359  LolC/E family lipoprotein releasing system, transmembrane protein  22.88 
 
 
423 aa  92.4  1e-17  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5401  LolC/E family lipoprotein releasing system, transmembrane protein  22.38 
 
 
423 aa  92.8  1e-17  Delftia acidovorans SPH-1  Bacteria  normal  0.117898  normal 
 
 
-
 
NC_004347  SO_2257  lipoprotein releasing system transmembrane protein LolE  26.22 
 
 
410 aa  92  2e-17  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010682  Rpic_0960  lipoprotein releasing system, transmembrane protein, LolC/E family  23.44 
 
 
416 aa  92  2e-17  Ralstonia pickettii 12J  Bacteria  normal  0.100135  normal  0.0249332 
 
 
-
 
NC_012856  Rpic12D_1056  lipoprotein releasing system, transmembrane protein, LolC/E family  23.12 
 
 
416 aa  91.3  3e-17  Ralstonia pickettii 12D  Bacteria  normal  0.530836  normal  0.504254 
 
 
-
 
NC_007954  Sden_1676  LolC/E family lipoprotein releasing system, transmembrane protein  26.75 
 
 
411 aa  91.3  3e-17  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000000596735  n/a   
 
 
-
 
NC_008825  Mpe_A2748  putative lipoprotein releasing system transmembrane  22.6 
 
 
418 aa  90.9  4e-17  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_1199  lipoprotein releasing system, transmembrane protein, LolC/E family  24.36 
 
 
416 aa  90.5  5e-17  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.132324 
 
 
-
 
NC_013946  Mrub_2903  hypothetical protein  25.91 
 
 
410 aa  90.5  5e-17  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.110934 
 
 
-
 
NC_007947  Mfla_2095  LolC/E family lipoprotein releasing system, transmembrane protein  23.36 
 
 
421 aa  90.1  6e-17  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.00459774  normal 
 
 
-
 
NC_008700  Sama_1332  lipoprotein releasing system transmembrane protein LolE  25.9 
 
 
411 aa  90.1  7e-17  Shewanella amazonensis SB2B  Bacteria  normal  0.803281  normal 
 
 
-
 
NC_011899  Hore_23230  ABC-type transport system, involved in lipoprotein release, permease component  23.42 
 
 
419 aa  89.7  8e-17  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000130781  n/a   
 
 
-
 
NC_007510  Bcep18194_A5420  LolC/E family lipoprotein releasing system, transmembrane protein  22.38 
 
 
417 aa  89.7  9e-17  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A0369  hypothetical protein  25.49 
 
 
403 aa  89.7  1e-16  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_25430  hypothetical protein  25.07 
 
 
416 aa  89.4  1e-16  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_23240  ABC-type transport system, involved in lipoprotein release, permease component  21.69 
 
 
415 aa  88.6  2e-16  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1098  hypothetical protein  24.59 
 
 
429 aa  88.6  2e-16  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.0142755  n/a   
 
 
-
 
NC_009656  PSPA7_2173  hypothetical protein  25.07 
 
 
416 aa  87.8  3e-16  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A3444  putative ABC transporter permease protein  23.06 
 
 
389 aa  86.7  8e-16  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.0182994  normal  0.122472 
 
 
-
 
NC_011060  Ppha_0718  protein of unknown function DUF214  23.26 
 
 
424 aa  86.3  9e-16  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1076  LolC/E family lipoprotein releasing system, transmembrane protein  22.19 
 
 
416 aa  86.3  0.000000000000001  Ralstonia eutropha JMP134  Bacteria  normal  0.0609031  n/a   
 
 
-
 
NC_007908  Rfer_3232  LolC/E family lipoprotein releasing system, transmembrane protein  21.28 
 
 
418 aa  86.3  0.000000000000001  Rhodoferax ferrireducens T118  Bacteria  normal  0.215903  n/a   
 
 
-
 
NC_008553  Mthe_0918  hypothetical protein  23.49 
 
 
389 aa  86.3  0.000000000000001  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_003295  RSc1117  lipoprotein releasing system transmembrane  22.81 
 
 
416 aa  85.5  0.000000000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0172186  normal  0.243011 
 
 
-
 
NC_008786  Veis_2530  hypothetical protein  24.93 
 
 
407 aa  85.1  0.000000000000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0995274  normal 
 
 
-
 
NC_009456  VC0395_0383  hypothetical protein  24.33 
 
 
419 aa  85.1  0.000000000000002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1366  LolC/E family lipoprotein releasing system, transmembrane protein  21.36 
 
 
408 aa  85.1  0.000000000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.217764  n/a   
 
 
-
 
NC_012791  Vapar_1210  lipoprotein releasing system, transmembrane protein, LolC/E family  22.6 
 
 
418 aa  85.5  0.000000000000002  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_6489  protein of unknown function DUF214  24.19 
 
 
406 aa  84.7  0.000000000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3421  LolC/E family lipoprotein releasing system, transmembrane protein  22.19 
 
 
417 aa  84.7  0.000000000000003  Acidovorax sp. JS42  Bacteria  normal  0.176273  normal 
 
 
-
 
NC_008062  Bcen_5963  LolC/E family lipoprotein releasing system, transmembrane protein  21.8 
 
 
417 aa  84.3  0.000000000000003  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.28938  n/a   
 
 
-
 
NC_011313  VSAL_II0692  outer membrane-specific lipoprotein transporter subunit LolE  24.13 
 
 
414 aa  84.7  0.000000000000003  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.374483  n/a   
 
 
-
 
NC_008542  Bcen2424_2114  LolC/E family lipoprotein releasing system, transmembrane protein  21.8 
 
 
417 aa  84.3  0.000000000000003  Burkholderia cenocepacia HI2424  Bacteria  normal  0.08589  n/a   
 
 
-
 
NC_007520  Tcr_1172  LolC/E family lipoprotein releasing system, transmembrane protein  21.97 
 
 
416 aa  84.3  0.000000000000004  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0830739  n/a   
 
 
-
 
NC_010084  Bmul_1156  LolC/E family lipoprotein releasing system, transmembrane protein  21.22 
 
 
417 aa  84.3  0.000000000000004  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.342008  normal  0.0203303 
 
 
-
 
NC_009654  Mmwyl1_2146  LolC/E family lipoprotein releasing system, transmembrane protein  23.05 
 
 
414 aa  84  0.000000000000005  Marinomonas sp. MWYL1  Bacteria  normal  0.299394  normal  0.273871 
 
 
-
 
NC_013173  Dbac_3383  lipoprotein releasing system, transmembrane protein, LolC/E family  22.87 
 
 
409 aa  83.6  0.000000000000006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2567  lipoprotein releasing system, transmembrane protein, LolC/E family  22.85 
 
 
417 aa  84  0.000000000000006  Burkholderia phytofirmans PsJN  Bacteria  normal  0.178921  normal  0.0571791 
 
 
-
 
NC_007614  Nmul_A2509  LolC/E family lipoprotein releasing system, transmembrane protein  22.94 
 
 
414 aa  83.6  0.000000000000007  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.418191  n/a   
 
 
-
 
NC_010322  PputGB1_1695  LolC/E family lipoprotein releasing system, transmembrane protein  23.55 
 
 
416 aa  83.6  0.000000000000007  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0851802 
 
 
-
 
NC_010508  Bcenmc03_2132  LolC/E family lipoprotein releasing system, transmembrane protein  21.8 
 
 
417 aa  83.2  0.000000000000008  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.435353  normal  0.150883 
 
 
-
 
NC_011992  Dtpsy_2755  lipoprotein releasing system, transmembrane protein, LolC/E family  22.48 
 
 
417 aa  83.2  0.000000000000008  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2154  lipoprotein releasing system, transmembrane protein, LolC/E family  23.77 
 
 
416 aa  82.4  0.00000000000001  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0219351 
 
 
-
 
NC_010501  PputW619_1671  LolC/E family lipoprotein releasing system, transmembrane protein  23.26 
 
 
416 aa  82.4  0.00000000000001  Pseudomonas putida W619  Bacteria  normal  0.966628  normal  0.962664 
 
 
-
 
NC_009092  Shew_1632  LolC/E family lipoprotein releasing system, transmembrane protein  24.28 
 
 
410 aa  82.8  0.00000000000001  Shewanella loihica PV-4  Bacteria  decreased coverage  0.0000222973  normal  0.613387 
 
 
-
 
NC_009439  Pmen_1607  LolC/E family lipoprotein releasing system, transmembrane protein  24.06 
 
 
415 aa  83.2  0.00000000000001  Pseudomonas mendocina ymp  Bacteria  normal  0.345047  normal  0.129769 
 
 
-
 
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