| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5401 |
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| Symbol | |
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| ID | 5751016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 5994629 |
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| End bp | 5995900 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641300529 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_001566415 |
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| Protein GI | 160900833 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.117898 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACAAT GCATGCCCAT GCAATTTCCC TACGAACTGG CCGTCGGCTG GCGCTACACC
CGGGCGGGGC GTGCCACGCG CCGCAACGGC TTCATCTCGT TCATCTCCGG CGTCTCCATG
CTGGGCATCG CCCTCGGTGT GGCGGCGCTG ATCATCGTGC TCAGCGTGAT GAACGGCTTC
CAGAAGGAAG TGCGCGACCG CATGCTCAGC GTGGTCTCGC ACATCGAGAT CTTCGCGCCC
CAGGGCGCGG CGCTGCCCGA TCTGGAGCGC ACCATGCGCG AGGCGCGCGC CAACCCCGAC
GTGCTGGGCG CCGCCCCCTT CGTCGCGGCC CAGGCGCTGC TGGCGCGTGG CGAGGACATG
AAGGGCACCC TGGTGCGCGG CATCGATCCG GCGCGCGAGG GCGAGGTCAC CGACGTGGCC
GCCACCAATG CCGAGGTGCT CAAGCGCCTG GTGCCCGGCG AATTCAACGT GGTGCTGGGC
GTGGAGCTGG CGCGCTCGCT GGGCGTGCGC CAGGGCGACA TGGTCACGCT GATCGCCCCG
GGCGGCCAGG TCACGCCGGC CGGCGTGGTG CCGCGCCTCA AGCAGATGCA TGTGGCCGGC
ACCTTCGACT CCGGCCACTA CGAATACGAC TCGGCCCTGG TGATGATGCA TTACGAGGAC
GCGCAGCGCC TGTTCCGCCT GGAAGGGCCG ACTGGCATCC GCCTGAAGCT CAAGGACCTG
CACGAGGCGC CACGCGTGGC CATGGAGCTG GCCCACACCA TCACCGACCG CCTGCTGATC
CGCGACTGGA CCCAGCAGAA CCGCACCTGG TTCGCGGCCG TGCAGCTGGA AAAACGCATG
ATGTTCATCA TCCTCACGCT CATCGTCGCC GTGGCCGCGT TCAACCTGGT GTCCACGCTG
GTGATGACGG TGACCGACAA GCGCGCCGAC ATCGCCATCC TGCGCACGCT GGGCGCCTCG
CCGTCCAGCA TCATGGGCAT CTTCATGGTG CAGGGCGCCA TGGTGGGCGT CATCGGCACC
TTCGCGGGCC TGCTGCTGGG CCTGGGCATC GCCTTCAACA TCGATGTCAT CGTGCCGGCC
ATCGAGCGCC TGCTGCACGC CAACTTCCTG CCCAAGGACA TCTACCTGAT CAGCAAGATG
CCCAGTGATC CGCAGTACAG CGACATCATG CCCATCGCCG TGATCTCCCT GGTCCTGGCC
TTTGTCGCCA CCATCTATCC CAGCTGGCGC GCCAGCCGCG TGAACCCCGC CGAGGCGCTG
CGCTATGAAT GA
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| Protein sequence | MTQCMPMQFP YELAVGWRYT RAGRATRRNG FISFISGVSM LGIALGVAAL IIVLSVMNGF
QKEVRDRMLS VVSHIEIFAP QGAALPDLER TMREARANPD VLGAAPFVAA QALLARGEDM
KGTLVRGIDP AREGEVTDVA ATNAEVLKRL VPGEFNVVLG VELARSLGVR QGDMVTLIAP
GGQVTPAGVV PRLKQMHVAG TFDSGHYEYD SALVMMHYED AQRLFRLEGP TGIRLKLKDL
HEAPRVAMEL AHTITDRLLI RDWTQQNRTW FAAVQLEKRM MFIILTLIVA VAAFNLVSTL
VMTVTDKRAD IAILRTLGAS PSSIMGIFMV QGAMVGVIGT FAGLLLGLGI AFNIDVIVPA
IERLLHANFL PKDIYLISKM PSDPQYSDIM PIAVISLVLA FVATIYPSWR ASRVNPAEAL
RYE
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