| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0692 |
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| Symbol | lolE |
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| ID | 6962070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 758106 |
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| End bp | 759350 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643381970 |
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| Product | outer membrane-specific lipoprotein transporter subunit LolE |
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| Protein accession | YP_002265008 |
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| Protein GI | 209809470 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family
[TIGR02213] lipoprotein releasing system, transmembrane protein LolE |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.374483 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCTCTC CGCTTTCTCT CTTTATTGGA GGTCGTTTTG CTCGAGCAAA GCAACGCAAT
AAAATGGTGT CGTTCATTTC AATCTCTTCA ACGCTAGGCA TTGCGATTGG CGTGGCGGTG
ATCATTATTG GTCTTTCTGC CATGAATGGA TTTGAACGAG AGTTGCAGAA TCGAGTGTTG
TCGGTTATTC CTCATGCTGA GCTTGAAGGG GTAAAAAACC CGATCACAGA TTGGCAAACT
ATGATGCAGC AAGCCAAGCA GCACCCTAAA GTGACAGGGG CCGCACCTTA TGTTCGTTTT
ACTGCGTTAT TAGAAAGAGG CAGTAAATTA AAAGCGGTTG AAGTGAGAGG GGTTGATCCT
GTCTTGGAAA CTTCAGTATC TAAGTTACCT GAATACATTA ATAAAGGGGC TTGGGAGTCG
TTTTCCGCCC ATAAGCAAAG TGTGATTTTA GGGAAAGGCG TTGCGGATAC CTTAAACGTT
AATGTTGGAG ATTGGATCAC GGCGTTGATC CCTGACGAGA ACAGCGATAA GCAATTGCGT
TCACCAAAGC GTCAACGTTT GCAAGTTGTG GGATTATTGT CACTTGGTGG GCAAGTTGAT
CACGGTTTAG CGATTATTCC TCTGCAAGAT GCACAACAAT ACATTAATTT AGGTAAAGCC
GTTTCTGGTG TTTCTTTGCA GGTGAGTGAT GTATTAGAAG CACAAGACAT AGTAAGAGAA
GTGGGCGGAA CACTAACCGA ATATGTGTAT TTACGTAGCT GGATTCAAAA ATATGGTTAT
CTATACCGAG ATATTCAACT TGTACGCTCA ATCATGTACC TTGTGATGGT TTTAGTTATT
GGGGTGGCTT GTTTTAATAT CGTCTCGACG TTAATGATGG CAGTAAAAGA TCGCTCTGGC
GACATCGCTA TTTTAAGAAC AATGGGAGCA ACCGATGGGT TAATTAAACG CATCTTTGTC
TGCCAAGGTA TTTTCTCTGG TGTGACGGGG AGTATCGCAG GCTCCTTGTT GGGATCATTA
GTTGCATTGA ATTTAACGCC AATGATTAAA GGGCTTGAAT CTTTAGTTGG TCATCAATTC
TTATCGGGTG ATATCTATTT TGTTGATTTC TTACCTTCAC AATTAGTGTG GAGCGATGTG
GCTATTGTAA CTTGTACCGC GATTCTATTA AGTTCAATTG CGACATGGTA TCCAGCCAGA
AAAGCAAGTC AATTGCACCC AGCAGCGGTA CTCAGCGCAA AGTAA
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| Protein sequence | MFSPLSLFIG GRFARAKQRN KMVSFISISS TLGIAIGVAV IIIGLSAMNG FERELQNRVL
SVIPHAELEG VKNPITDWQT MMQQAKQHPK VTGAAPYVRF TALLERGSKL KAVEVRGVDP
VLETSVSKLP EYINKGAWES FSAHKQSVIL GKGVADTLNV NVGDWITALI PDENSDKQLR
SPKRQRLQVV GLLSLGGQVD HGLAIIPLQD AQQYINLGKA VSGVSLQVSD VLEAQDIVRE
VGGTLTEYVY LRSWIQKYGY LYRDIQLVRS IMYLVMVLVI GVACFNIVST LMMAVKDRSG
DIAILRTMGA TDGLIKRIFV CQGIFSGVTG SIAGSLLGSL VALNLTPMIK GLESLVGHQF
LSGDIYFVDF LPSQLVWSDV AIVTCTAILL SSIATWYPAR KASQLHPAAV LSAK
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