| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1545 |
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| Symbol | |
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| ID | 5661942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1881397 |
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| End bp | 1882620 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641236133 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_001501405 |
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| Protein GI | 157961371 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0135691 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCTTT CATTATCGTT TTATATTGGT TATCGCTACT GGCGATCCCG TAAAGCCAAC
GCATTCGCAT CATTTATTAC TATTTTTTCT GTTTCTGGCA TTTTACTCGG TGTAGCGGCA
TTGATTGTGG TCAGTTCGGT GATGAATGGC TTAGAGAACC AGCTTAAACA ACGAATTTTA
GGGGCTGTGC CGCAATTAAC CGTGCACTCG CAAACGGCCA TCGAGAATTG GCCAAGCCAA
GTGGAGAAAC TAAGCCAACT TCCGGGCGTT CAGGGCGCAA CCCCAAGTAT ATCGACCCAA
GCCATGGTGC AGTCGCCGAG TAATATAGGC GCCGCGCAGG TGTATGGCAT CTATCCTGAG
CAGGAAAAAA CACTACTAAA TACCACTAAG CGAGTTTACT CGGGAGATTT TGATGCCTTA
GAGTCGGGGA AATACCGGGT TATTTTAGGC GCTGAGTTAG CCCGAACACT CGACGTTGCG
CCTGGGGATA AAATTCGAAT TCTTAGTGGT GATGGCGTTG TGTATACGCC ATTGGGGCCG
GTGCCGAGTC AACGTAAGTT CACCGTGGCG GGTGTTTTTG AAATGGGCTC ACAAGTCGAT
GCGACTCTGG CCTATGTTCA TCATGATGAT GCTCAGCGAC TGATGCGTCA AAAGGCGGGA
GAGGTCAAGG AGCTGCGTCT ATATCTCGAT GATCCTTTCA ATGCCGCCAA AATGGCGCCA
GAGGTCGTTG CGCAATTTGC CACTCCCGTG ACGACGACCG ATTGGCGTGA CACCTATGGA
CATCTGTTTG GGGCGGTGAA GATGGAAAAG AACATGATGT CTTTGATGCT TAGTCTCATT
ATTGCCGTTG CAGCCTTTAA TATCGTTTCC GCCCTGGTGA TGATGGTGGT GGATAAAACT
ACGGATGTTG CGGTACTCAA GACCCAAGGT CTGACGACGG CGAATGTGAT GGGCATTTTT
ATGATCCAAG GCTCACTCAA CGCGGTCATA GGTCTTATAT CCGGCGTGGC AGTCGGCAGT
TTATTAACCC TCAACCTCAA CACCATAACT CAGGCTCTTG GGATCTCTAT CTTGGGTGCA
GGGCAGAATC TGCCTGTTCA ACTTGAGTTG AGTCAATTGA CTTGGATTGT TGTCGGCACC
TTAGTGATGA CATTGGTGGC CACTGTTTAT CCTGCAATTA GAGCGGCTAA TGTGCAGCCA
GCGGCCGCAC TCAGGTATGA GTAG
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| Protein sequence | MNLSLSFYIG YRYWRSRKAN AFASFITIFS VSGILLGVAA LIVVSSVMNG LENQLKQRIL
GAVPQLTVHS QTAIENWPSQ VEKLSQLPGV QGATPSISTQ AMVQSPSNIG AAQVYGIYPE
QEKTLLNTTK RVYSGDFDAL ESGKYRVILG AELARTLDVA PGDKIRILSG DGVVYTPLGP
VPSQRKFTVA GVFEMGSQVD ATLAYVHHDD AQRLMRQKAG EVKELRLYLD DPFNAAKMAP
EVVAQFATPV TTTDWRDTYG HLFGAVKMEK NMMSLMLSLI IAVAAFNIVS ALVMMVVDKT
TDVAVLKTQG LTTANVMGIF MIQGSLNAVI GLISGVAVGS LLTLNLNTIT QALGISILGA
GQNLPVQLEL SQLTWIVVGT LVMTLVATVY PAIRAANVQP AAALRYE
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