More than 300 homologs were found in PanDaTox collection
for query gene Swoo_1429 on replicon NC_010506
Organism: Shewanella woodyi ATCC 51908



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010506  Swoo_1429  hypothetical protein  100 
 
 
411 aa  833    Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3197  hypothetical protein  66.36 
 
 
427 aa  532  1e-150  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2660  hypothetical protein  65.85 
 
 
410 aa  529  1e-149  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_001464  ABC-type transport system involved in lipoprotein release permease component  60.24 
 
 
409 aa  504  1e-141  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05401  hypothetical protein  59.61 
 
 
409 aa  499  1e-140  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013501  Rmar_2534  protein of unknown function DUF214  33.82 
 
 
406 aa  227  3e-58  Rhodothermus marinus DSM 4252  Bacteria  normal  0.261611  n/a   
 
 
-
 
NC_007520  Tcr_0434  hypothetical protein  27.82 
 
 
425 aa  167  4e-40  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2374  ABC-type transport system, permease component  28.78 
 
 
409 aa  159  9e-38  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000200206  n/a   
 
 
-
 
NC_008554  Sfum_2498  hypothetical protein  29.75 
 
 
380 aa  152  1e-35  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.00553555  normal 
 
 
-
 
NC_009831  Ssed_3196  hypothetical protein  26.34 
 
 
410 aa  139  7.999999999999999e-32  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_5041  putative ABC transporter, permease protein  26.3 
 
 
441 aa  139  1e-31  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_5042  ABC transporter, permease protein, putative  28.81 
 
 
415 aa  137  3.0000000000000003e-31  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_012849  Rpic12D_5303  protein of unknown function DUF214  25.06 
 
 
830 aa  137  4e-31  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1663  protein of unknown function DUF214  26.39 
 
 
535 aa  134  3.9999999999999996e-30  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2659  hypothetical protein  27.55 
 
 
421 aa  130  3e-29  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_2373  ABC-type transport system, permease component  28.16 
 
 
407 aa  127  3e-28  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000351897  n/a   
 
 
-
 
NC_007520  Tcr_0435  hypothetical protein  27.14 
 
 
431 aa  125  2e-27  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.131989  n/a   
 
 
-
 
NC_013501  Rmar_2535  protein of unknown function DUF214  25.73 
 
 
412 aa  122  8e-27  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001465  ABC-type transport system involved in lipoprotein release permease component  27.3 
 
 
411 aa  122  1.9999999999999998e-26  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2903  hypothetical protein  29.01 
 
 
410 aa  120  6e-26  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.110934 
 
 
-
 
NC_010506  Swoo_1430  hypothetical protein  26.69 
 
 
428 aa  118  1.9999999999999998e-25  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2901  hypothetical protein  28.23 
 
 
411 aa  115  1.0000000000000001e-24  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0934048 
 
 
-
 
NC_009784  VIBHAR_05402  hypothetical protein  25.61 
 
 
411 aa  112  9e-24  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007958  RPD_2864  LolC/E family lipoprotein releasing system, transmembrane protein  24.61 
 
 
422 aa  103  6e-21  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.998701  normal  0.300269 
 
 
-
 
NC_011004  Rpal_3275  lipoprotein releasing system, transmembrane protein, LolC/E family  25.08 
 
 
422 aa  103  7e-21  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.314483  n/a   
 
 
-
 
NC_007778  RPB_2598  LolC/E family lipoprotein releasing system, transmembrane protein  24.61 
 
 
426 aa  102  9e-21  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.258492  normal  0.437082 
 
 
-
 
NC_011899  Hore_23230  ABC-type transport system, involved in lipoprotein release, permease component  25.88 
 
 
419 aa  101  2e-20  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000130781  n/a   
 
 
-
 
NC_007964  Nham_2196  LolC/E family lipoprotein releasing system, transmembrane protein  24.7 
 
 
426 aa  101  3e-20  Nitrobacter hamburgensis X14  Bacteria  decreased coverage  0.00714902  n/a   
 
 
-
 
NC_008553  Mthe_0918  hypothetical protein  24.03 
 
 
389 aa  100  4e-20  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_013422  Hneap_0224  lipoprotein releasing system, transmembrane protein, LolC/E family  24.16 
 
 
415 aa  99.8  9e-20  Halothiobacillus neapolitanus c2  Bacteria  normal  0.0374875  n/a   
 
 
-
 
NC_007643  Rru_A1578  LolC/E family lipoprotein releasing system, transmembrane protein  23.78 
 
 
417 aa  99.8  9e-20  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0665062  n/a   
 
 
-
 
NC_010682  Rpic_1691  protein of unknown function DUF214  24.83 
 
 
295 aa  97.1  5e-19  Ralstonia pickettii 12J  Bacteria  normal  0.132145  normal 
 
 
-
 
NC_007406  Nwi_1864  LolC/E family lipoprotein releasing system, transmembrane protein  23.82 
 
 
426 aa  96.7  7e-19  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.172929  normal  0.0361846 
 
 
-
 
NC_012560  Avin_29500  hypothetical protein  27.73 
 
 
416 aa  96.3  8e-19  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_23240  ABC-type transport system, involved in lipoprotein release, permease component  24.53 
 
 
415 aa  96.3  8e-19  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0371  putative ABC transporter, integral membrane protein  25.8 
 
 
422 aa  95.1  2e-18  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.258896  n/a   
 
 
-
 
NC_009484  Acry_0940  LolC/E family lipoprotein releasing system, transmembrane protein  24.7 
 
 
415 aa  94.7  2e-18  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2497  hypothetical protein  24.48 
 
 
422 aa  95.1  2e-18  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.536779  normal 
 
 
-
 
NC_010172  Mext_1065  LolC/E family lipoprotein releasing system, transmembrane protein  23.64 
 
 
439 aa  94.4  3e-18  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.123078 
 
 
-
 
NC_010725  Mpop_1000  lipoprotein releasing system, transmembrane protein, LolC/E family  23.33 
 
 
439 aa  94.4  4e-18  Methylobacterium populi BJ001  Bacteria  normal  normal  0.14096 
 
 
-
 
NC_011060  Ppha_0421  protein of unknown function DUF214  24.83 
 
 
422 aa  93.6  5e-18  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.850184  n/a   
 
 
-
 
NC_007912  Sde_1809  lipoprotein releasing system transmembrane protein LolE  23.98 
 
 
414 aa  93.2  8e-18  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1195  lipoprotein releasing system, transmembrane protein, LolC/E family  23.64 
 
 
439 aa  92.8  9e-18  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4409  LolC/E family lipoprotein releasing system, transmembrane protein  25.42 
 
 
433 aa  92.8  1e-17  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.452061 
 
 
-
 
NC_007925  RPC_2428  LolC/E family lipoprotein releasing system, transmembrane protein  23.36 
 
 
426 aa  92  2e-17  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.507047  normal  0.0670699 
 
 
-
 
NC_009784  VIBHAR_07028  efflux ABC transporter ATP-binding/permease  27.71 
 
 
422 aa  91.7  2e-17  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011899  Hore_23260  ABC-type transport system, involved in lipoprotein release, permease component  24.35 
 
 
419 aa  92  2e-17  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000978  ABC-type transport system involved in lipoprotein release permease component  27.71 
 
 
422 aa  91.3  3e-17  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_3204  LolC/E family lipoprotein releasing system, transmembrane protein  23.1 
 
 
427 aa  91.3  3e-17  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.22882  normal 
 
 
-
 
NC_010814  Glov_0758  lipoprotein releasing system, transmembrane protein, LolC/E family  22.85 
 
 
420 aa  90.5  5e-17  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.00020569  n/a   
 
 
-
 
NC_010002  Daci_5401  LolC/E family lipoprotein releasing system, transmembrane protein  25.15 
 
 
423 aa  89  1e-16  Delftia acidovorans SPH-1  Bacteria  normal  0.117898  normal 
 
 
-
 
NC_009485  BBta_4530  LolC/E family lipoprotein releasing system, transmembrane protein  22.91 
 
 
426 aa  89.4  1e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.947625  normal 
 
 
-
 
NC_007794  Saro_1765  LolC/E family lipoprotein releasing system, transmembrane protein  25.37 
 
 
413 aa  88.6  2e-16  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.157209  n/a   
 
 
-
 
NC_008609  Ppro_3015  LolC/E family lipoprotein releasing system, transmembrane protein  24.34 
 
 
420 aa  88.6  2e-16  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1280  lipoprotein releasing system, transmembrane protein, LolC/E family  21.75 
 
 
434 aa  87.8  3e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0107812  normal  0.317103 
 
 
-
 
NC_007512  Plut_1763  putative ABC transporter, integral membrane protein  24.09 
 
 
422 aa  88.2  3e-16  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.412712 
 
 
-
 
NC_011894  Mnod_4145  lipoprotein releasing system, transmembrane protein, LolC/E family  24.01 
 
 
428 aa  87.8  3e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3232  LolC/E family lipoprotein releasing system, transmembrane protein  24.78 
 
 
418 aa  87.4  4e-16  Rhodoferax ferrireducens T118  Bacteria  normal  0.215903  n/a   
 
 
-
 
NC_013889  TK90_1199  lipoprotein releasing system, transmembrane protein, LolC/E family  22.77 
 
 
416 aa  87  5e-16  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.132324 
 
 
-
 
NC_009720  Xaut_4462  LolC/E family lipoprotein releasing system, transmembrane protein  23.71 
 
 
447 aa  87  5e-16  Xanthobacter autotrophicus Py2  Bacteria  normal  0.919983  normal  0.365763 
 
 
-
 
NC_012850  Rleg_1372  lipoprotein releasing system, transmembrane protein, LolC/E family  21.97 
 
 
434 aa  87  6e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1172  LolC/E family lipoprotein releasing system, transmembrane protein  22.49 
 
 
416 aa  86.3  9e-16  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.0830739  n/a   
 
 
-
 
NC_011761  AFE_0481  lipoprotein releasing system transmembrane protein LolC  22.22 
 
 
414 aa  85.9  0.000000000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B0507  LolC/E family lipoprotein releasing system, transmembrane protein  22.22 
 
 
427 aa  86.3  0.000000000000001  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3700  LolC/E family lipoprotein releasing system, transmembrane protein  26.33 
 
 
417 aa  85.5  0.000000000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.8164 
 
 
-
 
NC_007947  Mfla_2095  LolC/E family lipoprotein releasing system, transmembrane protein  23.8 
 
 
421 aa  86.3  0.000000000000001  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.00459774  normal 
 
 
-
 
NC_011206  Lferr_0641  lipoprotein releasing system, transmembrane protein, LolC/E family  22.22 
 
 
414 aa  85.9  0.000000000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.256103  normal 
 
 
-
 
NC_007509  Bcep18194_C7413  ABC efflux pump, inner membrane subunit  24.67 
 
 
405 aa  85.1  0.000000000000002  Burkholderia sp. 383  Bacteria  normal  0.155043  normal 
 
 
-
 
NC_008786  Veis_2542  hypothetical protein  24.12 
 
 
441 aa  85.1  0.000000000000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.429279  normal  0.740963 
 
 
-
 
NC_011989  Avi_1740  ABC transporter membrane spanning protein  21.82 
 
 
435 aa  85.1  0.000000000000002  Agrobacterium vitis S4  Bacteria  normal  0.147499  n/a   
 
 
-
 
NC_007484  Noc_2669  LolC/E family lipoprotein releasing system, transmembrane protein  21.94 
 
 
415 aa  84.7  0.000000000000003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2259  lipoprotein releasing system transmembrane protein LolC, putative  23.81 
 
 
416 aa  83.6  0.000000000000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008228  Patl_1727  LolC/E family lipoprotein releasing system, transmembrane protein  24.24 
 
 
403 aa  83.6  0.000000000000005  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1577  protein of unknown function DUF214  26.52 
 
 
401 aa  83.6  0.000000000000006  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.340093  n/a   
 
 
-
 
NC_009511  Swit_2346  LolC/E family lipoprotein releasing system, transmembrane protein  24.33 
 
 
416 aa  83.6  0.000000000000006  Sphingomonas wittichii RW1  Bacteria  normal  0.323587  normal 
 
 
-
 
NC_008576  Mmc1_1033  LolC/E family lipoprotein releasing system, transmembrane protein  26.13 
 
 
413 aa  83.2  0.000000000000008  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.229485 
 
 
-
 
NC_010515  Bcenmc03_5146  LolC/E family lipoprotein releasing system, transmembrane protein  23.15 
 
 
417 aa  83.2  0.000000000000008  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1747  LolC/E family lipoprotein releasing system, transmembrane protein  21.92 
 
 
414 aa  82.4  0.00000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.726619  n/a   
 
 
-
 
NC_012791  Vapar_1210  lipoprotein releasing system, transmembrane protein, LolC/E family  23.68 
 
 
418 aa  82.4  0.00000000000001  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1175  LolC/E family lipoprotein releasing system, transmembrane protein  21.86 
 
 
416 aa  82.4  0.00000000000001  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.433535  normal 
 
 
-
 
NC_009720  Xaut_4227  hypothetical protein  22.96 
 
 
408 aa  81.6  0.00000000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  0.405326  normal  0.650749 
 
 
-
 
NC_007298  Daro_2836  LolC/E family lipoprotein releasing system, transmembrane protein  24.63 
 
 
415 aa  82  0.00000000000002  Dechloromonas aromatica RCB  Bacteria  normal  0.620052  normal 
 
 
-
 
NC_010505  Mrad2831_2040  LolC/E family lipoprotein releasing system, transmembrane protein  22.7 
 
 
436 aa  82  0.00000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.489126  normal 
 
 
-
 
NC_008543  Bcen2424_5136  LolC/E family lipoprotein releasing system, transmembrane protein  23.46 
 
 
422 aa  81.6  0.00000000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  0.433144  normal 
 
 
-
 
NC_007614  Nmul_A2509  LolC/E family lipoprotein releasing system, transmembrane protein  22.82 
 
 
414 aa  82  0.00000000000002  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.418191  n/a   
 
 
-
 
NC_008061  Bcen_3231  LolC/E family lipoprotein releasing system, transmembrane protein  23.46 
 
 
422 aa  81.6  0.00000000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.113164  n/a   
 
 
-
 
NC_008340  Mlg_1440  LolC/E family lipoprotein releasing system, transmembrane protein  21.78 
 
 
415 aa  81.6  0.00000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.141439  normal  0.211841 
 
 
-
 
NC_008577  Shewana3_2285  LolC/E family lipoprotein releasing system, transmembrane protein  23.41 
 
 
416 aa  80.9  0.00000000000003  Shewanella sp. ANA-3  Bacteria  normal  0.0114014  normal 
 
 
-
 
NC_011899  Hore_19660  ABC-type transport system, involved in lipoprotein release, permease component  22.84 
 
 
400 aa  81.3  0.00000000000003  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1332  lipoprotein releasing system transmembrane protein LolE  23.53 
 
 
411 aa  80.5  0.00000000000005  Shewanella amazonensis SB2B  Bacteria  normal  0.803281  normal 
 
 
-
 
NC_009901  Spea_1545  LolC/E family lipoprotein releasing system, transmembrane protein  22.69 
 
 
407 aa  80.5  0.00000000000005  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0135691  n/a   
 
 
-
 
NC_011662  Tmz1t_1986  lipoprotein releasing system, transmembrane protein, LolC/E family  22.99 
 
 
418 aa  80.1  0.00000000000007  Thauera sp. MZ1T  Bacteria  normal  0.914701  n/a   
 
 
-
 
NC_010577  XfasM23_0348  LolC/E family lipoprotein releasing system, transmembrane protein  23.01 
 
 
413 aa  80.1  0.00000000000007  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_009051  Memar_2199  hypothetical protein  23.39 
 
 
400 aa  79.7  0.00000000000008  Methanoculleus marisnigri JR1  Archaea  normal  0.748449  n/a   
 
 
-
 
NC_007798  NSE_0137  putative permease  22.83 
 
 
407 aa  79.7  0.00000000000008  Neorickettsia sennetsu str. Miyayama  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_1046  lipoprotein releasing system transmembrane protein  21.69 
 
 
414 aa  79  0.0000000000001  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0938  LolC/E family lipoprotein releasing system, transmembrane protein  21.69 
 
 
414 aa  79  0.0000000000001  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1252  LolC/E family lipoprotein releasing system, transmembrane protein  21.23 
 
 
414 aa  79.3  0.0000000000001  Halorhodospira halophila SL1  Bacteria  normal  0.368874  n/a   
 
 
-
 
NC_008009  Acid345_3567  LolC/E family lipoprotein releasing system, transmembrane protein  22.45 
 
 
423 aa  79.3  0.0000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.756596  normal 
 
 
-
 
NC_010513  Xfasm12_0384  lipoprotein releasing system transmembrane protein  23.01 
 
 
413 aa  79.3  0.0000000000001  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
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