| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1740 |
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| Symbol | |
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| ID | 7386732 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1450411 |
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| End bp | 1451718 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643651052 |
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| Product | ABC transporter membrane spanning protein |
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| Protein accession | YP_002549253 |
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| Protein GI | 222148296 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.147499 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGCAGTG AAACCGGAAG CTCTGCGGCA GGCGATACCG CAGTGCCGTC ATCCGCAAAG
CCGTTTTCCG CATTTGAGCG CATGGTGGCC TGGCGCTACC TGCGCGCTCG GCGCAAAGAG
GCGGTGATTT CGGTCATTGC CGGCTTTTCC TTTGTCGGCA TCATGCTGGG GGTTGCGACC
CTGATCATCG TCATGGCTGT CATGAACGGT TTTCGGACCG AGTTGATTTC TCGTATCCTC
GGCATAAACG GGCATATGAT CGTTCAGCCG GTCGACAGTC CCTTTACCGA CTTTGCCGAT
CTTGCCAAGA AATTCTCCGC AGTGCCCGGT GTCACCATGG CGCTGCCGCT GGTCGAGGGC
CAGACGCTGG CCTCTGGCAA GGGTGGGGCT GGGACGGGTG CGTTGGTGCG CGGCATCCGC
CCCGACGACC TGTTGAAGCT CAAGGAAGTG GCTGCGAATA TCAAGACCGG CGACATGGTG
GGCTTCACAT CCGGCCAGGG CGTGCTGATC GGTTCGCGCA TGGCCAACGA TCTCGGTTTG
CAGGCGGGCG ATTCCATTAC TCTAGTCTCG CCAGAGGGGG ACGTGACTCC GATGGGAGTC
AACCCGCGGG TCAAATCCTA CAAGATTTCC GGTACGTTCG AGATCGGCAT GTCGGAATAT
GATTCCTCGA TCATTTACAT GCCGCTTGAA GAATCGCAGC TCTATTTCAA CGCGGAAGGC
GTGGTGCAAT CCATCGAATT GTTCGTCACC AATCCTGACG ACATCGATGA ACTGCGCCCC
AAAGTCGAGG CGGCAGCGGG CCGGCAGGTA TTCATCAGCG ATTGGCGTCA GCGTAACCAG
ACCTTCTTCT CCGCCTTGCA GGTGGAGCGC AATGTGATGT TCATGATCCT GACATTGATC
GTTATTGTCG CGGCGCTGAA CATCATTTCC GGCCTGATCA TGCTGGTGAA GGACAAGAGC
AGCGATATCG CCATTCTGAA GACCATGGGC GCCAGTTCAA GTTCGATCCT TCGGATCTTC
TTCATGACGG GTGCGGCCAT CGGCATCGCC GGCACGTTCG CTGGCGTTGG ACTGGGCGTG
CTGGTCTGTC TGAACATCGA ATCGATCCGG AATTTCTTCT CCTGGGTCTC CGGTACGGTG
TTGTTTGATC CGCAACTCTA CTTCCTCAGC AAATTGCCGG CGGATATGAG CTTTGGTGAA
ACGGTTTCGG TGATTATCAT GTCGCTCACC CTATCCTTTA TCGCCACCAT CTTTCCGGCA
TGGCGGGCGG CCCGGCTCGA CCCCGTGCAA GCCCTGCGTT ACGAATAA
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| Protein sequence | MSSETGSSAA GDTAVPSSAK PFSAFERMVA WRYLRARRKE AVISVIAGFS FVGIMLGVAT
LIIVMAVMNG FRTELISRIL GINGHMIVQP VDSPFTDFAD LAKKFSAVPG VTMALPLVEG
QTLASGKGGA GTGALVRGIR PDDLLKLKEV AANIKTGDMV GFTSGQGVLI GSRMANDLGL
QAGDSITLVS PEGDVTPMGV NPRVKSYKIS GTFEIGMSEY DSSIIYMPLE ESQLYFNAEG
VVQSIELFVT NPDDIDELRP KVEAAAGRQV FISDWRQRNQ TFFSALQVER NVMFMILTLI
VIVAALNIIS GLIMLVKDKS SDIAILKTMG ASSSSILRIF FMTGAAIGIA GTFAGVGLGV
LVCLNIESIR NFFSWVSGTV LFDPQLYFLS KLPADMSFGE TVSVIIMSLT LSFIATIFPA
WRAARLDPVQ ALRYE
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