| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1727 |
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| Symbol | |
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| ID | 4171936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2067274 |
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| End bp | 2068485 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638054737 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_661302 |
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| Protein GI | 109898047 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCACT CTGTTTCTGC ATTTATCGGT TTGCGTTATG CAAAATCGTC TAAAGGTAAT
CAATTTATCG CCTTTATTAA CGCCTTCTCT GCCATTGGCA TCGCCCTTGG TTTAATGTCT
TTGATTACGG TGTTGTCTGT AATGAACGGA TTCGAGGGGG ACTTGAAAGA TCGTATCCTC
GGTATCGCGC CGCATATAGT GGTAGATACG CAGGGTGAAA ACGAGCAGAT CATTTCGAGC
TTGTCAAAAT TACCGGGCGT AACCGCCACC AGTGACTTTA TTGAGTCTGA AGGCGTGGTG
CAGTCATCGC GCAGCTTAGA AGGGGTGATG ATACAAGGCG TTGAGCCACA AACCACTCAT
GAGCACTCCA TTATTGCCAA GAATATGTTG GTCGGGCAGA TCGCAGATTT AACTCCGGGC
AGTTATGGCA TTATCGTCGG TCGAGCATTA TCAACGCGCC TAGGCTTGAG GGTGGGTGAG
CAAACACGCA TTTTATCTGC ACAGGGCAGT GTCTTTGGGC CATTTGGGCA AATGCCGAGC
CAGCGTTTAT TCACTGTGGT AGGTGTGTTT GATGTGGGCT CAGAGCTTGA TGCCAAAGTG
ATTTTAATGA ACATCAATGA CAGCGCTAAG CTGATGCGTA ATAAGGTCAG CCGTATCGCG
CAAACGCGGT TATTTTTGCA AGATCCGTTT GAATATAAGA CGGTGGTCGA CAAGGTAACT
GAGGTTGGCC TTAAAAGCGA CGACTGGCGT ACGCGCCAAG GCCCGCTGTT TGATGCCGTT
AAGATGGAAA AAAACATGAT GGCCTTAATG CTGCTGCTCA TTATCGCGGT GGCGGCCTTT
AATATTGTGT CGGCGCTGGT GATGGTGGTG ACTGAGAAGA AAGGCGATAT TGCTATTTTA
CTGACCCAAG GGTTGTCGCG CGGGCGCATT ATGCAGGTCT TTTTGGTTAA TGGCTTATAT
AACGGTATTA AAGGAACGCT GTTTGGCGCA GCGGGCGGTT TATTACTTGT CAGCCAACTA
AACAATTTGT TGAGCTTATT TAATGTGCCG ATTATGGCGG CTACCGGCGG GGCAGGGTTG
CCCATAGTCA TGCATTGGCA TCAGGTGGTG ATGCTTATTC TGTTTTCCTT GCTGCTGTGC
TTTGCTGCCA GTATTTATCC TGCTTATCGG GCGGTGAAGG TTGACCCAGC CAGTGCGCTT
AAATATGAAT AG
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| Protein sequence | MFHSVSAFIG LRYAKSSKGN QFIAFINAFS AIGIALGLMS LITVLSVMNG FEGDLKDRIL
GIAPHIVVDT QGENEQIISS LSKLPGVTAT SDFIESEGVV QSSRSLEGVM IQGVEPQTTH
EHSIIAKNML VGQIADLTPG SYGIIVGRAL STRLGLRVGE QTRILSAQGS VFGPFGQMPS
QRLFTVVGVF DVGSELDAKV ILMNINDSAK LMRNKVSRIA QTRLFLQDPF EYKTVVDKVT
EVGLKSDDWR TRQGPLFDAV KMEKNMMALM LLLIIAVAAF NIVSALVMVV TEKKGDIAIL
LTQGLSRGRI MQVFLVNGLY NGIKGTLFGA AGGLLLVSQL NNLLSLFNVP IMAATGGAGL
PIVMHWHQVV MLILFSLLLC FAASIYPAYR AVKVDPASAL KYE
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