| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2346 |
|---|
| Symbol | |
|---|
| ID | 5199707 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 2605884 |
|---|
| End bp | 2607134 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640581892 |
|---|
| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
|---|
| Protein accession | YP_001262843 |
|---|
| Protein GI | 148555261 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.323587 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCTCA ACCGCTACGA ACGGATGATC GCCAAGCGCT ACCTGCTGCC GGGCAGGGGG
GAGGCGTTCA TCTTCCTCGT CGCGTCGATC AGCCTGGTCG CGGTCGCGCT CGGCGTCGCC
GCGCTGATCG TGGTGATGAG CGTGATGAAC GGCTTCCGCG CGGAGCTGTT CGACAAGATC
GTCGGGCTCA ACGGCCATGC CGTGGTGCAG GGCTATGACG GCAAGCTCGG CGACTGGCGC
CGGATCGCCG CCGATGCGCG CAAGCTGCCC GGCGTCGTCT CGGCCACCCC GCTGATCGAG
CAGCCGCTGA TGGCGAGCTT CGGCGGTCGG GTCGAAGGCG TGCTGGTGCG CGGCATGACG
CTCGAGGACA TCCGCCGCAA CCCGGTGATC CAAGGCAAGG TGGTGCGCGG CTCGCTCGAC
GCGCTGACCC CCGGTTCCGA CCGGGTCGCG ATCGGCGCGC GGCTCGCCGA GCAGCTTGGC
GCGGACCTCG GCAGCCAGAT CAGCCTGATC AGCCCGCAGG GGCAGACCAC CCCGTTCGGC
ACCGTGCCGC GCATCGTCTC CTATCAGGTC GCCGCGATCT TCGAGGTCGG CGTCTACGAC
TATGACAAGG CGTTCGTGGT GATGCCGATG TCGGACGCGC AGACGCTGCT GATGCTCGAC
GACGCGGTCG GGATGATCGA GATCCAGACG GTCGACGCCG ATCGGGTCGG CGAGATATTG
GCGCCGCTCA AGCCGCGCAT CGCGATGCAG GGGGAGATTC GCGACTGGCG GGCGCTCAAC
AGTTCGCTGT TCGAGGCGCT GGCGGTCGAG CGGGTGACGA TGTTCGTCGT CCTGTCGCTG
ATCATCCTCG TCGCGGTGTT CAACATATTG TCGTCGCTGA TCATGTTGGT CCGCGCCAAG
CGGCGCGACA TCGCGATCCT GCGGACGATG GGCGCCTCGC GCGCCGCGCT GATGAAGATC
TTCATGACGG TGGGCACGGT GATCGGCGTG CTCGGCACCG GCGCGGGCAT CGCGCTCGGC
GCGGTCTTCC TCTTCTACCG GCAGGCGGTG GTCAATTTCG TCCAGTTCGT CACCGGCCAG
AATCTGTGGG ACCCGTCGAT CCGCTTCCTG ACCGAGCTGC CGGCCAAGAG CGACCCGGTC
GAGGTCGGCG CGATCATCGC CATGGCGCTG GGCTTCAGCT TCCTGTCGAC GCTCTATCCG
GCGTGGAAGG CGGCGAGCAC CGATCCGGTG GAGGTGCTGC GCTATGAGTG A
|
|---|
| Protein sequence | MLLNRYERMI AKRYLLPGRG EAFIFLVASI SLVAVALGVA ALIVVMSVMN GFRAELFDKI
VGLNGHAVVQ GYDGKLGDWR RIAADARKLP GVVSATPLIE QPLMASFGGR VEGVLVRGMT
LEDIRRNPVI QGKVVRGSLD ALTPGSDRVA IGARLAEQLG ADLGSQISLI SPQGQTTPFG
TVPRIVSYQV AAIFEVGVYD YDKAFVVMPM SDAQTLLMLD DAVGMIEIQT VDADRVGEIL
APLKPRIAMQ GEIRDWRALN SSLFEALAVE RVTMFVVLSL IILVAVFNIL SSLIMLVRAK
RRDIAILRTM GASRAALMKI FMTVGTVIGV LGTGAGIALG AVFLFYRQAV VNFVQFVTGQ
NLWDPSIRFL TELPAKSDPV EVGAIIAMAL GFSFLSTLYP AWKAASTDPV EVLRYE
|
|---|
| |