| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3204 |
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| Symbol | |
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| ID | 5454779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3419418 |
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| End bp | 3420701 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640878793 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_001414467 |
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| Protein GI | 154253643 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.22882 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 65 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGACA CGACAAGCAG AGCCCGCGCC GGCAGCAGCC GCCCCTTCGG CGCCTTCGAA
TGGCTGCTCG CGATGCGCTA TCTCCGCGCC CGCCGCCGCG AGGGCTTCAT CTCCGTCATC
GCCGGCTTCT CCTTCGCGGG CATCATGCTC GGCGTCGCCG TCCTCATCAT CGTCATGTCG
GTGATGAACG GTTTCCGCAC CGAACTTCTC TCCCGCATCC TCGGTCTCAA CGGCCACATG
TTCGTGCGCG GCGTCGGCGC CAGCATCGCC GACTACGACG CCATCGCAGA GCGCATCCGC
TCCGTCCCCG GCGTCGTCAG CGTCATGCCG CTGGTCGATG GCCAGGTCAT GGTGCAGAGC
CCGCAAAATG CCAGCGGCGC GCTTGTCCGC GGCCTGCGCG AGCAGGACCT GAAGAGCCTC
TCCGTCGTCG CCGATAACAT AACAGTCGGC TCGCTGGACG GCTTCGACGA GGGCGGCGTC
GCCATCGGTT CGCGTCTCGC GCAGAACATG GGCCTCACCG TCGGCGACAG CATCACGCTC
CTCTCGCCGC GCGGCGCCAT CACGCCCTTC GGCACCGCCC CCCGCGTCGC CTCCTTCCCG
ATCCGCGCCA TCTTCGAAAT CGGCATGTCG GAATATGACG CGAGCTTCGT CTTCATGCCG
CTCGACGAGG CGCGCGGTTT CTTCCGCACC TATGAAGGCG TCAGCGCCCT CGAGCTTCGC
TTCCAGAACC CCGACAAGGT GAATGATTTC ATTCGCCCGG TCATGGAGGC GGCGGGCCCC
TGTTGCAACG TCCTCACCTG GCAGCAGATG AACCAGAGCT TCTTCAGCGC GCTCCAGGTC
GAGCGCAACG TGATGTTCCT CATCCTCACG CTCATCCTCA TCGTCGCAGC CCTCAACATC
ATCTCCGGCC TCATCATGCT CGTGAAGGAC AAGGGCAGGG ACATCGCCGT CCTGCGCACC
ATGGGCGCCA CGCGCGGCGC CGTCATGCGG GCCTTCTTCA TCTCCGGCGC CTCGATCGGC
TGCGCGGGCA CGCTGGCGGG CTTCCTGCTC GGCCTTGCCT TCTGCCTCAA CATCGAAACG
CTGCGCAAAT TCCTCTCGGA TCTTTCCGGC ACCGAGCTCT TCTCGCCGGA AGTCTATTTC
CTCACCCACA TGCCGGCCGA GGTCGATCCC GGCGAGGTCG GCGCGGTCGT CGCCATGGCG
CTCTTCCTGT CCTTCGCCGC CACGCTTTAT CCCGCCTGGC GCGCCGCCTC GCTCGATCCG
GTAGAGGCGC TCCGTTATGA ATGA
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| Protein sequence | MTDTTSRARA GSSRPFGAFE WLLAMRYLRA RRREGFISVI AGFSFAGIML GVAVLIIVMS
VMNGFRTELL SRILGLNGHM FVRGVGASIA DYDAIAERIR SVPGVVSVMP LVDGQVMVQS
PQNASGALVR GLREQDLKSL SVVADNITVG SLDGFDEGGV AIGSRLAQNM GLTVGDSITL
LSPRGAITPF GTAPRVASFP IRAIFEIGMS EYDASFVFMP LDEARGFFRT YEGVSALELR
FQNPDKVNDF IRPVMEAAGP CCNVLTWQQM NQSFFSALQV ERNVMFLILT LILIVAALNI
ISGLIMLVKD KGRDIAVLRT MGATRGAVMR AFFISGASIG CAGTLAGFLL GLAFCLNIET
LRKFLSDLSG TELFSPEVYF LTHMPAEVDP GEVGAVVAMA LFLSFAATLY PAWRAASLDP
VEALRYE
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