| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1065 |
|---|
| Symbol | |
|---|
| ID | 5832483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 1161145 |
|---|
| End bp | 1162464 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641366860 |
|---|
| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
|---|
| Protein accession | YP_001638541 |
|---|
| Protein GI | 163850498 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.123078 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCTTG CGTTGGGTAA GGCCGGTGTT TCCTTGAAGG GCGTCCTCGC ACGGCTGAAG
AACGCCCGCG CGAGCGCCTC CACGCCGCCC TTCGCGGGGT TCGAGTGGAT CATCGCCGGG
CGCTACCTGC GGGCGCGCCG CCGGGGCGGC GGCGTCTCGG TGGTGGCCCT GTTCTCCGTG
CTCGGCATCG CGGTGGGTGT GGCCACCCTC ATCATCGTGC TCTCGGTGAT GAACGGCTTC
CGCTCGGAAC TGCGCTCCAA GATCATCGGG CTCAACGGCC ACGTCTTCGC CGCGCCGATC
GACCGGCTGT TCACCGACTA CGTCGATCTG TCCGACCGGC TGGAAAAGGT CGCGGGCGTG
CGCGCCGTGG TGCCGATGGT GCAGGGGCAG GCCTTCGCCT CCTCGCCCTA TGGCGGCTCC
GGCGTGCTGG TGCGCGGCGT GCGCGAATCC GACCTGCCGA AGATCCCCGC CGTCTCGGGC
GCGATCAAGG GCGGGACGCT CGAAAACTTC GACGACGGCC AGGGGGTGGC GCTCGGCAAG
CGGCTCGCCG ACGCCCTTGG CCTGCAGGCG GGCGATCAGG TGACGCTCTC GACGCCGAAG
GGCGCGAGCA CGCCGTTCGG CACCGCCCCG CGCACCAAGA CCTACGCCGT CAAGGCGATC
TTCGAGATCG GCGTGACCGA TTTCGACACC ACCATGGCCT TCATGCCGCT GGCGGAGGCG
CAGGCCTTCT TCAACCGCGA CGGCGATGTC AGCGTGATCG AGATCTATCT CGACAACGCC
GACGCGGTGG GCGAGATGCG CGAGCCCCTG GAGATGGCGG CCGAGCGTCC GGTGCTGCTC
ACCGACTGGC GCCAGACCAA CCGCACCTTC TTCGGGGCGC TGGAGGTGGA GCGGAACGTG
ATGTTCCTGA TCCTCAACCT CATCGTGATC GTTGCGACCC TCAACATCAT CTCAGGGCTC
ATCCTGCTCG TGCGGGACAA GTCCTCGGAC ATCGCGATCC TGCGCACCAT GGGGGCGACG
CCGGGCACGA TCATGCGGGT CTTCCTCATC AACGGGGCGC TGATCGGCCT CGTTGGCACG
GCGATCGGGC TGATCGGCGG GGTGCTGTTC ACCCTCAACA TCAAGCCGAT CCAGCGCACC
CTGTTTCCCA CCGCCTGGGA CCCGACCGTG CGCTTCCTCG CCGAGATTCC GGCCGAGATG
AACACGAGCG AGGTCGTCAT CATCGTGATC ACCTCGGTGC TGCTGTCGCT GGCGGCGACC
CTCTATCCCT CCTGGCGCGC CGCCCGGCTC GATCCGGTGC AGGCCCTGCG CTACGGCTGA
|
|---|
| Protein sequence | MALALGKAGV SLKGVLARLK NARASASTPP FAGFEWIIAG RYLRARRRGG GVSVVALFSV
LGIAVGVATL IIVLSVMNGF RSELRSKIIG LNGHVFAAPI DRLFTDYVDL SDRLEKVAGV
RAVVPMVQGQ AFASSPYGGS GVLVRGVRES DLPKIPAVSG AIKGGTLENF DDGQGVALGK
RLADALGLQA GDQVTLSTPK GASTPFGTAP RTKTYAVKAI FEIGVTDFDT TMAFMPLAEA
QAFFNRDGDV SVIEIYLDNA DAVGEMREPL EMAAERPVLL TDWRQTNRTF FGALEVERNV
MFLILNLIVI VATLNIISGL ILLVRDKSSD IAILRTMGAT PGTIMRVFLI NGALIGLVGT
AIGLIGGVLF TLNIKPIQRT LFPTAWDPTV RFLAEIPAEM NTSEVVIIVI TSVLLSLAAT
LYPSWRAARL DPVQALRYG
|
|---|
| |