| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1033 |
|---|
| Symbol | |
|---|
| ID | 4484041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 1264060 |
|---|
| End bp | 1265301 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639721781 |
|---|
| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
|---|
| Protein accession | YP_864957 |
|---|
| Protein GI | 117924340 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.229485 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAGCA GCTTTGAGTG GCGGGTGGGG CTGCGCTATC TGCGGGCCAA ACGCAGCCAG
CGTTTTATTA GTGCCATTAC CGCCCTATCG GTGGCGGGTA TTGCCTTGGG GGTGGCGGCG
CTGATTGTGG TGTTGGCCGT CATGACCGGC TTTCAGGGAG AGCTGCAACG GCAGATCCTG
GGCGTGGTGA GCCATGTGGT GGTGCAGTCC TACGGCGGCA GCATGGAGGA TGTCGAGGGC
GTGCTGCGCA AGGTGCAGAG CCGTCCCAAT GTAACCGGGG CGGCCCCTTT TGTGTTGGCC
AACGCCCTTA TTTACAACGG CGGGCAAGCC TATGGTATCG CCCTGCGTGG GGTTGATCCT
GAACGGGAGA AGGGGGTTTC CAACCTGCAC GTCAACATGG TGCGCGGGGA TGTGGCCGCC
ATGGCCGGTT TTGGGGTGGT ATTGGGGGAG TCTTTGGCCC GCAACTTGGG GGTTGGGCTC
AATGACCGCA TCACCCTCAT GGTGCCCAAG GGCAATGTGA CCCCCGCCGG TACGGTGCCC
AGGGTTAAAC GCTTTCGGGT GGCGGGGATC TTTGATTCGG GCATGCATGA GTATGACACC
AATCTGGCCT ATATCCATAT TAACGACGCT CAAAAGCTGC TGCGCTTGGG AGAGAGTGTG
ACCGGTATTG AGGTTAAAAC CCCCCACCCG GATCTGGCCA TGGGGGTGCG GCAGGATTTG
GAAAAACAGC TATCCGGCCA CTTTTGGATA CGCGACTGGA TGCAGATGAA CCGTAACTTT
TTTAATGCCA TCAAACTAGA GAAGGCCACC ATGTTTGTGA TCCTCTCGCT GGTGGTGTTG
GTGGCGGCTT TTAATATCAT CAGCTCGTTG ATCATGGTGG TTATGGAGAA GGGTAAGGAT
ATTGCGATCC TGAAAACCAT GGGGGCCAGA AGTCACTCGA TTATGGCGAT TTTTTTAATC
AACGGTGGCA TCATTGGGGT GGGTGGAACG TTAGCCGGGT TGGCCTTGGG TTTGGTGCTG
GCAGAAAATC TGGAGCGTAC CATCGGTTGG ATTGAACGCA CCTTTGGTTT GCAAATTCTG
CATGGTGATG TCTACTTTAT CGACAAACTC CCGGCCCAGG TGCTGCCATC GGATCTGTTT
TGGATTACCG TTATTTCGCT GAGCATTAGC CTGCTCTCGA CCCTCTATCC TGCGTGGCGG
GCTTCCCGCG TGGACCCGGT GGAGGCGCTG CGTTATGAAT GA
|
|---|
| Protein sequence | MFSSFEWRVG LRYLRAKRSQ RFISAITALS VAGIALGVAA LIVVLAVMTG FQGELQRQIL
GVVSHVVVQS YGGSMEDVEG VLRKVQSRPN VTGAAPFVLA NALIYNGGQA YGIALRGVDP
EREKGVSNLH VNMVRGDVAA MAGFGVVLGE SLARNLGVGL NDRITLMVPK GNVTPAGTVP
RVKRFRVAGI FDSGMHEYDT NLAYIHINDA QKLLRLGESV TGIEVKTPHP DLAMGVRQDL
EKQLSGHFWI RDWMQMNRNF FNAIKLEKAT MFVILSLVVL VAAFNIISSL IMVVMEKGKD
IAILKTMGAR SHSIMAIFLI NGGIIGVGGT LAGLALGLVL AENLERTIGW IERTFGLQIL
HGDVYFIDKL PAQVLPSDLF WITVISLSIS LLSTLYPAWR ASRVDPVEAL RYE
|
|---|
| |