Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1678 |
Symbol | |
ID | 4018154 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 1951791 |
End bp | 1953056 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637955689 |
Product | LolC/E family lipoprotein releasing system, transmembrane protein |
Protein accession | YP_562685 |
Protein GI | 91793034 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0156822 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGGCGC TATTACCCAT AATCATAGGG TGGCGTTTTT ACCGTGCTCG CCAATCAAAT GGTTTTATCG GCTTTATTTC TTTCGCCTCA ACGGCTGGCA TTGCCCTTGG GGTGGCCGTG CTGATCTTAG TGCTGTCGGC CATGAACGGG TTTGTAGAGC AATTAGAAGA CAGATTACTT GCGGTAGTGT CTCACGGTGA GCTTGTGGGG GCACAAGGCC CTATTCGCAA TTGGCAAGCC ATGGCTGATG ATGCCAGCTT AATGCCTGAG ATTATTGCCA CGGCGCCTTT TATTCGCCTG CAGGGGCTAG TGCAAAAGAG CGGGGGGTTT CAAGCGCTGA TGATCAATGG CATAGAGACC AGCCTAGAGA CTAAGGTGTC TAAGATTGCC GATTTCATGC CAGAGTCGGC CTGGGCATCA CTCATCCCAG CGGTAAATAA TATTGTCTTG GGTGAGAGCT TATTGAATAA ACTCGGCTTA AGTGTGGGCG ACTCACTGGT GCTGTATACA CCCAATATGG CAGGCAGCGA GGCGACACAG GGAACCGCTG GCAGACTCAA CACAGCTAAG AGTCACGTCT TTGTGGTTTC TGGGGTCTAT CGTCTGGGCG GTGAAATTGA ATCGAGCCAA GCCTATGTGT CCATGGGGTA TTTAAGTCAA TTGCTGGAAA TGGGGGAAGG CGTCACCGGC CTTAGGCTGA ATATTGCCGA CGTGTTTGCG GCGCCAAGGG TGACCAGAAG CTTAGGACTG ACCCAAGAAC AGTACCTGTA TTTGAATGAT TGGACCCGCA CCCAAGGGCA TTTATATCAA GATATTCAAT TGGTTCGTAG CATAATGTAT TTAGTCTTGG CACTGGTTAT CGCGGTGGCT TGTTTTAATA TTGTATCGAC CTTAGTGATG GCGGTACGGG ACAAGGCGTC CGAAATTGCT ATTCTGATGA CCATGGGGCT AAAACGCAGC GCTGTGATGA GTATTTTCAT CATGCAGGGT GCCCTTAATG GCTTATTGGG TTGCAGTATT GGGGCTGTGA TTGGCGTGAC TATGGCATTA AACTTATCCT CAATTGCCTC GGGCATAGAA TCCTTATTTG GCATAGCGCT GTTGGCAGGG GACGTATATT TTATCGACTT CTTGCCCTCG AAATTGCAAG GACAAGATGT GGCCATTGTG CTTGGTATGG GATTATTGAT GAGCCTAGTG GCGACCCTGT ATCCAGCTTG GAAAGCGAGC CATATCGATC CCGCCGCAGC GTTAGCTGGT CGTTAA
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Protein sequence | MKALLPIIIG WRFYRARQSN GFIGFISFAS TAGIALGVAV LILVLSAMNG FVEQLEDRLL AVVSHGELVG AQGPIRNWQA MADDASLMPE IIATAPFIRL QGLVQKSGGF QALMINGIET SLETKVSKIA DFMPESAWAS LIPAVNNIVL GESLLNKLGL SVGDSLVLYT PNMAGSEATQ GTAGRLNTAK SHVFVVSGVY RLGGEIESSQ AYVSMGYLSQ LLEMGEGVTG LRLNIADVFA APRVTRSLGL TQEQYLYLND WTRTQGHLYQ DIQLVRSIMY LVLALVIAVA CFNIVSTLVM AVRDKASEIA ILMTMGLKRS AVMSIFIMQG ALNGLLGCSI GAVIGVTMAL NLSSIASGIE SLFGIALLAG DVYFIDFLPS KLQGQDVAIV LGMGLLMSLV ATLYPAWKAS HIDPAAALAG R
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