Gene Sden_1678 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1678 
Symbol 
ID4018154 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1951791 
End bp1953056 
Gene Length1266 bp 
Protein Length421 aa 
Translation table11 
GC content50% 
IMG OID637955689 
ProductLolC/E family lipoprotein releasing system, transmembrane protein 
Protein accessionYP_562685 
Protein GI91793034 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4591] ABC-type transport system, involved in lipoprotein release, permease component 
TIGRFAM ID[TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0156822 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGCGC TATTACCCAT AATCATAGGG TGGCGTTTTT ACCGTGCTCG CCAATCAAAT 
GGTTTTATCG GCTTTATTTC TTTCGCCTCA ACGGCTGGCA TTGCCCTTGG GGTGGCCGTG
CTGATCTTAG TGCTGTCGGC CATGAACGGG TTTGTAGAGC AATTAGAAGA CAGATTACTT
GCGGTAGTGT CTCACGGTGA GCTTGTGGGG GCACAAGGCC CTATTCGCAA TTGGCAAGCC
ATGGCTGATG ATGCCAGCTT AATGCCTGAG ATTATTGCCA CGGCGCCTTT TATTCGCCTG
CAGGGGCTAG TGCAAAAGAG CGGGGGGTTT CAAGCGCTGA TGATCAATGG CATAGAGACC
AGCCTAGAGA CTAAGGTGTC TAAGATTGCC GATTTCATGC CAGAGTCGGC CTGGGCATCA
CTCATCCCAG CGGTAAATAA TATTGTCTTG GGTGAGAGCT TATTGAATAA ACTCGGCTTA
AGTGTGGGCG ACTCACTGGT GCTGTATACA CCCAATATGG CAGGCAGCGA GGCGACACAG
GGAACCGCTG GCAGACTCAA CACAGCTAAG AGTCACGTCT TTGTGGTTTC TGGGGTCTAT
CGTCTGGGCG GTGAAATTGA ATCGAGCCAA GCCTATGTGT CCATGGGGTA TTTAAGTCAA
TTGCTGGAAA TGGGGGAAGG CGTCACCGGC CTTAGGCTGA ATATTGCCGA CGTGTTTGCG
GCGCCAAGGG TGACCAGAAG CTTAGGACTG ACCCAAGAAC AGTACCTGTA TTTGAATGAT
TGGACCCGCA CCCAAGGGCA TTTATATCAA GATATTCAAT TGGTTCGTAG CATAATGTAT
TTAGTCTTGG CACTGGTTAT CGCGGTGGCT TGTTTTAATA TTGTATCGAC CTTAGTGATG
GCGGTACGGG ACAAGGCGTC CGAAATTGCT ATTCTGATGA CCATGGGGCT AAAACGCAGC
GCTGTGATGA GTATTTTCAT CATGCAGGGT GCCCTTAATG GCTTATTGGG TTGCAGTATT
GGGGCTGTGA TTGGCGTGAC TATGGCATTA AACTTATCCT CAATTGCCTC GGGCATAGAA
TCCTTATTTG GCATAGCGCT GTTGGCAGGG GACGTATATT TTATCGACTT CTTGCCCTCG
AAATTGCAAG GACAAGATGT GGCCATTGTG CTTGGTATGG GATTATTGAT GAGCCTAGTG
GCGACCCTGT ATCCAGCTTG GAAAGCGAGC CATATCGATC CCGCCGCAGC GTTAGCTGGT
CGTTAA
 
Protein sequence
MKALLPIIIG WRFYRARQSN GFIGFISFAS TAGIALGVAV LILVLSAMNG FVEQLEDRLL 
AVVSHGELVG AQGPIRNWQA MADDASLMPE IIATAPFIRL QGLVQKSGGF QALMINGIET
SLETKVSKIA DFMPESAWAS LIPAVNNIVL GESLLNKLGL SVGDSLVLYT PNMAGSEATQ
GTAGRLNTAK SHVFVVSGVY RLGGEIESSQ AYVSMGYLSQ LLEMGEGVTG LRLNIADVFA
APRVTRSLGL TQEQYLYLND WTRTQGHLYQ DIQLVRSIMY LVLALVIAVA CFNIVSTLVM
AVRDKASEIA ILMTMGLKRS AVMSIFIMQG ALNGLLGCSI GAVIGVTMAL NLSSIASGIE
SLFGIALLAG DVYFIDFLPS KLQGQDVAIV LGMGLLMSLV ATLYPAWKAS HIDPAAALAG
R