| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1634 |
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| Symbol | |
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| ID | 4922331 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1869062 |
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| End bp | 1870315 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640163196 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_001093760 |
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| Protein GI | 127512563 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0870078 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.876319 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAGAGA GACTCGCCTT CTGGGTAGGC TGGCGCTTCT ACATGGCGCG TCAGTCCAAT
CGTTTCATCA GCTTCATCTC CTTTGCCTCT ACCGCGGGCA TCGCCCTGGG GGTCGCCGTG
TTGATCACTG TGCTGTCGGC CATGAACGGC TTCGAGAAGG AGCTTGAGCA GCGCCTGCTG
GGCGTAGTGC CCCATGGTGA GCTGACCGGG GTGAATGAGC CGCTGCATGA CTGGCCTAAA
ATTGCCGAGG ATGCCAAGAA GATCCCCGGT ATTAATGCCA GCGCACCATT TGTGCGTATT
CAGGGCCTGA TCCAGAAACC CGGTGGCTTT CAGGGGCTAA CGGTTATCGG TATCACGCCG
GAATTAGAAG CAAAAGTTTC CAACATCCGT GATTTCATGC CGGATGCGGC CTGGCAGGCA
CTGGCCAGCA AAGAAAACAA TATCGTCCTG GGTAAGGGGC TGGCCGATGC GCTGGGGCTG
TCGCTGGGTA ACACCCTGAG CCTCTACACG CCAAACCTTG CCAGTCAGTC AACGGGACGC
GGCCTTGGCT CGGCCAAGAG TCATCAGTTT AAGGTGGCGG GAATTTTTGC GCTTGGCGGT
GAGCTAGATC TGACCACTGC CTACATCTCG CTGGATTATG GCGCCGAGCT GTTGGGGCTG
GGGGATGGCG TGAGCGGGAT CCGCATCAAG GTTGACGATG TCTTTGCCGC GCCGCAGCTG
ATCCGCACCT TGGGCTATAG CCAGTCGCAA TATATGTACC TTTCCGATTG GACCCGTACC
CAAGGCCATC TCTATCAGGA TATTCAGCTG GTGCGCGCCG TGATGTATCT GGTGCTGGCG
CTGGTGATCG CCGTGGCCTG TTTCAATATC GTCTCGACCC TAGTGATGGC GGTACGTGAC
AAGCAGTCGG AGATCGCCAT CTTGCTGACC ATGGGGATGG CCAAGGCCAC CATCATGGGG
ATCTTTGTGG TGCAGGGCGC GCTAAATGGG CTGTTGGGTT GCTTGATTGG TGCGGGGCTG
GGGATCACCC TTGCGCTGAA CCTCAGTGCT ATCGCCAGCG GTATCGAGCA GCTGTTTGGC
GTGCAGCTCT TATCGGCCGA TGTCTATTTC ATCGACTTCT TACCTTCACA GCTACATCTT
CTGGATGTGG CGCTGGTGGT GTCTCTGGCC TTGCTGATGA GCCTATTGGC CACCCTCTAT
CCCGCCTGGA AGGCGAGTCG TATTCATCCC GCCGAGGCAT TGGCTGGGCG ATAA
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| Protein sequence | MRERLAFWVG WRFYMARQSN RFISFISFAS TAGIALGVAV LITVLSAMNG FEKELEQRLL
GVVPHGELTG VNEPLHDWPK IAEDAKKIPG INASAPFVRI QGLIQKPGGF QGLTVIGITP
ELEAKVSNIR DFMPDAAWQA LASKENNIVL GKGLADALGL SLGNTLSLYT PNLASQSTGR
GLGSAKSHQF KVAGIFALGG ELDLTTAYIS LDYGAELLGL GDGVSGIRIK VDDVFAAPQL
IRTLGYSQSQ YMYLSDWTRT QGHLYQDIQL VRAVMYLVLA LVIAVACFNI VSTLVMAVRD
KQSEIAILLT MGMAKATIMG IFVVQGALNG LLGCLIGAGL GITLALNLSA IASGIEQLFG
VQLLSADVYF IDFLPSQLHL LDVALVVSLA LLMSLLATLY PAWKASRIHP AEALAGR
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