| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3479 |
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| Symbol | lolC |
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| ID | 3519336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 3617353 |
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| End bp | 3618621 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637285927 |
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| Product | lipoprotein releasing system transmembrane protein LolC |
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| Protein accession | YP_270153 |
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| Protein GI | 71279173 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.640884 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTTCAAC CTATTAGTAT CTTCATCGGG CTACGCTATA GTCGTAGTAA AAGCCATACA
GGCTTTGTTT CTTTTATAAC TTTCTTTTCC ACTGTTGGTA TTTTATTAGG GGTGGCTGCG
CTTATAACCG TTGTTTCTGT AATGAATGGT TTTGAAGGCG AATTAAAGAA ACGTATATTA
GGTATAGTTC CCCACGTAAT TGTTAGTGAC TTTAGCACTA TAGATACGGG TACTGACCAA
GAGAAATCCT GGCAAAACTT ACGTGAAGAG TTACTGACTC AACCCAATGT GCTGCGAGTA
ACACCTTTTC TTGAAAGTGA GGCTCTGATC CAATCAACTA AAGGGCTTCA AGGTGTTTTA
GTTCAAGGTA TCATGCCTAA ATTTGAACAA AAAAATATCG TAAGTACTCA TATGGTTGCT
GGTAGTATGG AGAATCTCTC GACACAAAGT TATTCTTTAG TCTTAGGGCA ATCTTTAGCC
AATAAATTAC AGGTTTCTCT TGGCGATGAG GTTCGCTTAG TACTGCCTAA TAAAAGTGTT
TTTACTCCGA TGGGGCGCAT TCCGGTACAA CGCGTTTTTA CTGTTGCGGG TATTTTTCAT
ATTGGTTCAC AGGTTGATGA TGCCATGGTT TACGTTGATA GTCGCTATGG TGCGAAATTA
CTCAGGCGAA CGGGTGATGG TATTGATAAA TTACGCCTAT ATTTAGATGA TGCATTTAAT
GCCAAAACCG TAGTGAAAAA CCTTGAGCAG AAGCAACAAA ATACAGAGCA TAGTAAAACA
CTCGATTCTA TTAATTTTAG TACTTGGGAT GAGAGCCAAG GAGCATTATT TTCAGCCGTG
AAAATGGAAA AAAATATGAT GTGGTTAATG TTAAGTTTAA TCGTGGCTGT GGCTGCATTT
AATATTGTTT CTGCGTTAGT GATGGTTGTT GTTGAAAAAC AAGCTGAAAT AGGCATATTG
CAAACATTAG GTTTAGCGCG AATTGAGGTT ATAAAAATAT TTATCACTCA AGGTATGGTT
AATGGCCTGT GGGGAGTTAG CTTAGGTGGA CTTCTTGGCG TGATATTAGC GCTAAATTTG
AACAGTATCT TGTTAGTGGT AGGGGTTAAT TTATTTGGTT TTGGTATGCA AGACTTACCA
ATAAAACTTG AGTGGTTTGA TGTGCTTACT ATTATTTTAT CTGCACTCGC AATGAGCTTT
CTTGCCACAC TTTATCCTGC ATACCAAGCC TCGACTACTC AGCCAGCTCA GGTATTACGA
AATGAATAA
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| Protein sequence | MFQPISIFIG LRYSRSKSHT GFVSFITFFS TVGILLGVAA LITVVSVMNG FEGELKKRIL
GIVPHVIVSD FSTIDTGTDQ EKSWQNLREE LLTQPNVLRV TPFLESEALI QSTKGLQGVL
VQGIMPKFEQ KNIVSTHMVA GSMENLSTQS YSLVLGQSLA NKLQVSLGDE VRLVLPNKSV
FTPMGRIPVQ RVFTVAGIFH IGSQVDDAMV YVDSRYGAKL LRRTGDGIDK LRLYLDDAFN
AKTVVKNLEQ KQQNTEHSKT LDSINFSTWD ESQGALFSAV KMEKNMMWLM LSLIVAVAAF
NIVSALVMVV VEKQAEIGIL QTLGLARIEV IKIFITQGMV NGLWGVSLGG LLGVILALNL
NSILLVVGVN LFGFGMQDLP IKLEWFDVLT IILSALAMSF LATLYPAYQA STTQPAQVLR
NE
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