| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1954 |
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| Symbol | |
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| ID | 7090121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | + |
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| Start bp | 2314334 |
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| End bp | 2315566 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 643460857 |
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| Product | lipoprotein releasing system, transmembrane protein, LolC/E family |
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| Protein accession | YP_002357881 |
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| Protein GI | 217973130 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00124198 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.0910172 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCAG GATTTCCTTT CTATATTGGT TACCGTTATT GGCGGGCCAG AAAAGCGAAC
GCGTTCGCGT CGTTCATTAC TCTATTTGCC GTTTCGGGCA TTTTTTTAGG CGTTGCCGCG
CTCATTGTTG TGAGTTCTGT GATGAATGGT CTCGAAGGCC AACTCAAACA ACGTATCTTA
GGCGCAGTAC CGCAATTAAC TCTTTATAGT GAAGCGCCCT TAGTCGATTG GACTGAGCAG
GCGAGTGCGC TTAAAGCCTT ACCGGGCGTA TTAGGCGTGA CGCCGAGCGT GTCAACGCAG
GCCATGGTGC AATCGGCGGC GAGTATTCGT GCTGTGCAGG TTTATGGCGT GTTCCCCGAG
TTAGCGGAAA AGTTATCTTC GGTTGCCCAG CACACTTACT CAGGTGCATT TGAGCAGCTG
ACGAGCGGCG ACTACAAGGT AATTTTGGGC TCTGAGCTGG CAAGGCAACT TAAAGTCGCC
CCCGGTGATA CGGTGCGATT ATTGAGTGGC GATGGTGTGG TGTACTCGCC CTTAGGCCCA
GTGCCGAGCC AACGTAAGTT TTTAGTCTCG GGCGTTTTTG AAATGGGCTC TCAGGTCGAT
GCGGGCGTGG CGTATATCCA TTATCAAGAT GCGAAACGGC TGATGCGCCA ACCCAGTGAG
GCTATTGATC AGCTTAGACT CTATTTAGCC GATCCCTTTA GCGCACCCGC TTTAGCGCCT
AAAGTGCAGG ATATATTAGC TAAACAAGGT GTTCAGGCGA CAACCAGCGA TTGGCGTGAT
ACCTATGGCC ACTTGTTTGG CGCGGTCAAA ATGGAAAAGA ACATGATGTC GCTAATGCTG
AGTCTGATTG TGGCCGTGGC CGCATTCAAT ATCGTCTCGG CGCTGGTCAT GATGGTGGTC
GATAAAACCA CTGATGTGGC GGTACTCAAA ACCCAAGGCG TGACCACACC CGCCGTGATG
GGCATTTTTG TGGTGCAAGG GTCGCTCAAT GCGGTGCTCG GTTTAGTGCT GGGGCTGGCG
GTTGGGATAC TCATCACCTT GAATCTGAAT GGCATTATGA CCACTTTAGG GATTTCTATT
CTAGGTGTGG GGCAGAGCTT GCCGGTGAAA TTGGAGTTGA TGCAGTTGTC TGTGATCGTG
ATTGGTACGC TACTGGTGAC CCTGCTGGCG ACCTTATATC CCGCACTGCG CGCCGCCAAT
GTGCAACCCG CGACTGCGCT CAGGTATGAG TAA
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| Protein sequence | MNPGFPFYIG YRYWRARKAN AFASFITLFA VSGIFLGVAA LIVVSSVMNG LEGQLKQRIL
GAVPQLTLYS EAPLVDWTEQ ASALKALPGV LGVTPSVSTQ AMVQSAASIR AVQVYGVFPE
LAEKLSSVAQ HTYSGAFEQL TSGDYKVILG SELARQLKVA PGDTVRLLSG DGVVYSPLGP
VPSQRKFLVS GVFEMGSQVD AGVAYIHYQD AKRLMRQPSE AIDQLRLYLA DPFSAPALAP
KVQDILAKQG VQATTSDWRD TYGHLFGAVK MEKNMMSLML SLIVAVAAFN IVSALVMMVV
DKTTDVAVLK TQGVTTPAVM GIFVVQGSLN AVLGLVLGLA VGILITLNLN GIMTTLGISI
LGVGQSLPVK LELMQLSVIV IGTLLVTLLA TLYPALRAAN VQPATALRYE
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