| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2397 |
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| Symbol | |
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| ID | 4279308 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2858367 |
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| End bp | 2859611 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135193 |
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| Product | lipoprotein releasing system, transmembrane protein, LolC/E family protein |
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| Protein accession | YP_751080 |
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| Protein GI | 114563567 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.218063 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTAG GATTTTCATT TTTTATCGGC TACCGTTACT GGCGAGCCCG AAAAGCGAAT
GCTTTTGCCT CTTTTATTAC CTTCTTTGCG GTATCGGGTA TTTTCTTAGG TGTTGCAGCA
TTAATTGTGG TCAGTTCTGT GATGAATGGA CTCGAAGGCC AGCTAAAAAA TCGCATTTTA
GGGGCGGTGC CGCAGATGAC CCTTATCAGT GATATGGGAT TTAGGGATTG GCAACAAAGT
AGCCAAAGCC TGTTGGCGGA TAAATATTTA TTACAAAATA TTCGTGGCAT TGTGCCTAGT
GCGACTACGC AAGCTATGAT CCAATCGAGC AGTAACATTC AAGCGATACA AATGTATGGG
GTTTACCCAG AGCTTGAGCA ATCATTGTCG AGCATTGCGG CTCATACTTA TTCAGATGCT
TTTTCAACGT TACAAGCTGG CAAGTATTCA ATTGTGCTCG GCACCGATCT AGCCCGCAAA
TTAGACGTTA AAGCGGGCGA TAAGGTTAGA GTGTTAAGCG GTGATGGGGT GGTGTATTCA
CCAATGGGCC CGGTGCCGAG TCAGCGTAAA TTTACTGTTG CAGGTGTATT TGAAATGGGC
TCGCAAGTCG ATTCAAGTGT TGCCTATGTA CATTATAAAG ATGCGCGTAA ATTGATGCGC
CAAGACAGTA ATACCATTAA TGAATTACGG GTCTATTTGA ACGATCCATT TTCCGCGCCA
GCGTTAGCAC CCAAACTGGT TGCTGGATTT GCGAAGCAAA ATATCGACAT CAAAACTCGT
GATTGGCGCC AAGATTTTGG TCATTTATTT GCCGCCGTAA AAATGGAAAA AAATATGATG
TCACTCATGC TCAGTTTAAT TGTCGCCGTA GCGGCATTTA ATATTGTGTC AGCATTGGTG
ATGATGGTGG TGGATAAAAC AACCGATGTT GCGGTGCTAA AAACCCAAGG GTTAACGACT
ACTTCAGTGA TGAATATTTT TATTGTGCAA GGCTCGCTTA ATGCGATGTT AGGGTTAATG
CTTGGCGCGA TTGCGGGCAT TGTGTTAACG CTTAACTTGA ATGAAATATT AACCACTGTT
GGTATTTCTA TTTTAGGTGT CGGTCAGACG CTACCTGTGG AATTATCATT AGCGCAATTG
AGTTTCATCA TCTTAGGCAC ATTATTGATT ACTTTAATTG CCACTCTTTA TCCTGCGTTG
TCCGCCGCAA GGGTTCAACC TGCTACCGCT TTGAGATACG AATAA
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| Protein sequence | MNLGFSFFIG YRYWRARKAN AFASFITFFA VSGIFLGVAA LIVVSSVMNG LEGQLKNRIL
GAVPQMTLIS DMGFRDWQQS SQSLLADKYL LQNIRGIVPS ATTQAMIQSS SNIQAIQMYG
VYPELEQSLS SIAAHTYSDA FSTLQAGKYS IVLGTDLARK LDVKAGDKVR VLSGDGVVYS
PMGPVPSQRK FTVAGVFEMG SQVDSSVAYV HYKDARKLMR QDSNTINELR VYLNDPFSAP
ALAPKLVAGF AKQNIDIKTR DWRQDFGHLF AAVKMEKNMM SLMLSLIVAV AAFNIVSALV
MMVVDKTTDV AVLKTQGLTT TSVMNIFIVQ GSLNAMLGLM LGAIAGIVLT LNLNEILTTV
GISILGVGQT LPVELSLAQL SFIILGTLLI TLIATLYPAL SAARVQPATA LRYE
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