More than 300 homologs were found in PanDaTox collection
for query gene RSc1895 on replicon NC_003295
Organism: Ralstonia solanacearum GMI1000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003295  RSc1895  putative transcription regulator protein  100 
 
 
252 aa  525  1e-148  Ralstonia solanacearum GMI1000  Bacteria  normal  0.030885  normal 
 
 
-
 
NC_003296  RS02135  putative transcription regulator protein  57.54 
 
 
252 aa  299  3e-80  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0601  two component transcriptional regulator, LuxR family  44.05 
 
 
215 aa  68.2  0.0000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0351  LuxR family transcriptional regulator  29.49 
 
 
258 aa  64.3  0.000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.637296  normal  0.0151595 
 
 
-
 
NC_013595  Sros_8799  response regulator receiver protein  42.35 
 
 
227 aa  63.5  0.000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.755207  normal 
 
 
-
 
NC_009483  Gura_3112  regulatory protein, LuxR  28.72 
 
 
250 aa  63.5  0.000000003  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_1981  two component transcriptional regulator, LuxR family  30 
 
 
222 aa  62.4  0.000000006  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  34.69 
 
 
226 aa  60.8  0.00000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
NC_008009  Acid345_0268  two component LuxR family transcriptional regulator  50 
 
 
217 aa  60.5  0.00000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.289536  normal 
 
 
-
 
NC_011353  ECH74115_2690  DNA-binding transcriptional activator SdiA  31.08 
 
 
240 aa  59.7  0.00000004  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.0029365  normal  0.0383701 
 
 
-
 
NC_013947  Snas_1960  two component transcriptional regulator, LuxR family  39.29 
 
 
216 aa  60.1  0.00000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_32780  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  35.85 
 
 
216 aa  59.3  0.00000005  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_1266  DNA-binding transcriptional activator SdiA  31.08 
 
 
240 aa  59.3  0.00000005  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.00315864  hitchhiker  0.00193945 
 
 
-
 
NC_009972  Haur_1104  two component LuxR family transcriptional regulator  33.09 
 
 
218 aa  59.3  0.00000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.348687  n/a   
 
 
-
 
CP001637  EcDH1_1730  transcriptional regulator, LuxR family  31.08 
 
 
240 aa  58.9  0.00000007  Escherichia coli DH1  Bacteria  hitchhiker  0.000000557622  n/a   
 
 
-
 
NC_007947  Mfla_2409  LuxR family transcriptional regulator  24.42 
 
 
272 aa  58.9  0.00000007  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3321  two component transcriptional regulator, LuxR family  33.07 
 
 
305 aa  58.9  0.00000008  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.536368 
 
 
-
 
NC_009800  EcHS_A2015  DNA-binding transcriptional activator SdiA  31.08 
 
 
240 aa  58.9  0.00000008  Escherichia coli HS  Bacteria  hitchhiker  0.0000284169  n/a   
 
 
-
 
NC_010468  EcolC_1723  DNA-binding transcriptional activator SdiA  31.08 
 
 
240 aa  58.9  0.00000008  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.00781439  normal 
 
 
-
 
NC_007614  Nmul_A0238  LuxR family transcriptional regulator  33.83 
 
 
267 aa  58.2  0.0000001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A2579  LuxR family transcriptional regulator  23 
 
 
257 aa  58.2  0.0000001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.286869  n/a   
 
 
-
 
NC_009801  EcE24377A_2150  DNA-binding transcriptional activator SdiA  32.03 
 
 
240 aa  58.5  0.0000001  Escherichia coli E24377A  Bacteria  hitchhiker  0.000560081  n/a   
 
 
-
 
NC_010658  SbBS512_E1044  DNA-binding transcriptional activator SdiA  32.03 
 
 
240 aa  58.5  0.0000001  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.000369866  n/a   
 
 
-
 
NC_013174  Jden_1602  two component transcriptional regulator, LuxR family  43.66 
 
 
226 aa  58.5  0.0000001  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  32.76 
 
 
231 aa  58.2  0.0000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_1986  two component transcriptional regulator, LuxR family  43.18 
 
 
226 aa  58.2  0.0000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  46.55 
 
 
224 aa  57.8  0.0000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_007333  Tfu_2233  LuxR response regulator receiver  40 
 
 
228 aa  57.8  0.0000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2010  two component transcriptional regulator, LuxR family  41.46 
 
 
214 aa  57.4  0.0000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_2681  response regulator receiver protein  29.1 
 
 
262 aa  57.4  0.0000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.217011  normal 
 
 
-
 
NC_013131  Caci_4197  transcriptional regulator, LuxR family  42.86 
 
 
998 aa  57.8  0.0000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_06250  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  40.48 
 
 
228 aa  57  0.0000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0759  two component transcriptional regulator, LuxR family  38.1 
 
 
221 aa  57  0.0000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.174089  n/a   
 
 
-
 
NC_007333  Tfu_1845  LuxR response regulator receiver  42.35 
 
 
215 aa  57  0.0000003  Thermobifida fusca YX  Bacteria  hitchhiker  0.00433344  n/a   
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  34.74 
 
 
226 aa  57  0.0000003  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_009380  Strop_1952  regulatory protein, LuxR  45.71 
 
 
96 aa  56.6  0.0000004  Salinispora tropica CNB-440  Bacteria  normal  0.801604  normal  0.129884 
 
 
-
 
NC_009654  Mmwyl1_2822  response regulator receiver protein  50.82 
 
 
211 aa  56.2  0.0000004  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.473652 
 
 
-
 
NC_013512  Sdel_0795  regulatory protein LuxR  36.14 
 
 
202 aa  56.2  0.0000005  Sulfurospirillum deleyianum DSM 6946  Bacteria  hitchhiker  0.0000492678  n/a   
 
 
-
 
NC_013595  Sros_0199  response regulator receiver protein  35 
 
 
213 aa  55.8  0.0000006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1513  LuxR family transcriptional regulator  25.25 
 
 
246 aa  55.8  0.0000006  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000493267  normal 
 
 
-
 
NC_008699  Noca_1318  response regulator receiver  37.78 
 
 
225 aa  55.8  0.0000006  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009430  Rsph17025_4078  hypothetical protein  50.91 
 
 
243 aa  55.8  0.0000007  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0439982  normal  0.0668702 
 
 
-
 
NC_009953  Sare_2352  two component LuxR family transcriptional regulator  45 
 
 
230 aa  55.5  0.0000008  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.139824 
 
 
-
 
NC_013947  Snas_3676  two component transcriptional regulator, LuxR family  49.09 
 
 
214 aa  55.5  0.0000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0625047  normal  0.0780809 
 
 
-
 
NC_013595  Sros_4219  response regulator receiver protein  35.71 
 
 
217 aa  55.5  0.0000009  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.0092025  hitchhiker  0.000784643 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  36.11 
 
 
242 aa  55.5  0.0000009  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  34.67 
 
 
221 aa  55.1  0.000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0642  putative response regulator  37.14 
 
 
217 aa  54.7  0.000001  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0335  two component transcriptional regulator, LuxR family  33.61 
 
 
220 aa  55.1  0.000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  36.36 
 
 
235 aa  54.7  0.000001  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal 
 
 
-
 
NC_013739  Cwoe_0366  two component transcriptional regulator, LuxR family  40.7 
 
 
220 aa  54.7  0.000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.0587069  normal  0.203995 
 
 
-
 
NC_013595  Sros_3998  response regulator receiver protein  43.21 
 
 
233 aa  54.3  0.000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.363745  normal  0.263649 
 
 
-
 
NC_006349  BMAA1345  N-acyl homoserine lactone transcriptional regulator  47.27 
 
 
239 aa  54.3  0.000002  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2786  two component LuxR family transcriptional regulator  46.55 
 
 
210 aa  53.9  0.000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0443035  normal  0.922606 
 
 
-
 
NC_007435  BURPS1710b_A2485  BpsR  47.27 
 
 
239 aa  54.3  0.000002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A0165  LuxR family transcriptional regulator  55.1 
 
 
79 aa  53.9  0.000002  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1510  ATP-dependent transcription regulator LuxR  47.27 
 
 
239 aa  54.3  0.000002  Burkholderia thailandensis E264  Bacteria  normal  0.08907  n/a   
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  38.96 
 
 
305 aa  54.3  0.000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  32.48 
 
 
241 aa  54.3  0.000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_008148  Rxyl_2809  two component LuxR family transcriptional regulator  35.83 
 
 
219 aa  54.3  0.000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0296  two component transcriptional regulator, LuxR family  35.16 
 
 
198 aa  53.9  0.000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.1736  normal 
 
 
-
 
NC_013441  Gbro_2730  response regulator receiver  41.67 
 
 
216 aa  53.9  0.000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.776601  n/a   
 
 
-
 
NC_008784  BMASAVP1_0329  autoinducer-binding transcriptional regulator BpsR  47.27 
 
 
239 aa  54.3  0.000002  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0607  autoinducer-binding transcriptional regulator BpsR  47.27 
 
 
239 aa  54.3  0.000002  Burkholderia mallei NCTC 10229  Bacteria  normal  0.83559  n/a   
 
 
-
 
NC_009075  BURPS668_A1295  autoinducer-binding transcriptional regulator BpsR  47.27 
 
 
239 aa  54.3  0.000002  Burkholderia pseudomallei 668  Bacteria  normal  0.312538  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1223  autoinducer-binding transcriptional regulator BpsR  47.27 
 
 
239 aa  54.3  0.000002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4417  two component transcriptional regulator, LuxR family  40.7 
 
 
232 aa  54.3  0.000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009079  BMA10247_A0962  autoinducer-binding transcriptional regulator BpsR  47.27 
 
 
239 aa  54.3  0.000002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1927  LuxR family transcriptional regulator  34.09 
 
 
257 aa  53.5  0.000003  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  37.93 
 
 
229 aa  53.5  0.000003  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_010581  Bind_0974  two component LuxR family transcriptional regulator  34.21 
 
 
309 aa  53.5  0.000003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.883175  normal  0.426964 
 
 
-
 
NC_014210  Ndas_2780  two component transcriptional regulator, LuxR family  44.44 
 
 
219 aa  53.5  0.000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.855193  normal  0.402473 
 
 
-
 
NC_014210  Ndas_4857  two component transcriptional regulator, LuxR family  35.71 
 
 
234 aa  53.1  0.000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.243741 
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  44.83 
 
 
230 aa  53.1  0.000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.455968 
 
 
-
 
NC_013526  Tter_2548  two component transcriptional regulator, LuxR family  36.73 
 
 
218 aa  53.1  0.000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_1389  transcriptional regulator, LuxR family  42.86 
 
 
320 aa  53.1  0.000004  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3669  response regulator receiver protein  49.06 
 
 
213 aa  53.1  0.000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0654  two component LuxR family transcriptional regulator  44.93 
 
 
256 aa  53.1  0.000004  Acidovorax citrulli AAC00-1  Bacteria  normal  0.639317  normal 
 
 
-
 
NC_009380  Strop_0395  two component LuxR family transcriptional regulator  39.77 
 
 
217 aa  53.1  0.000004  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1106  two component LuxR family transcriptional regulator  48.28 
 
 
223 aa  53.1  0.000004  Delftia acidovorans SPH-1  Bacteria  normal  0.584765  normal 
 
 
-
 
NC_013947  Snas_1734  two component transcriptional regulator, LuxR family  50 
 
 
188 aa  52.8  0.000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.34281  normal 
 
 
-
 
NC_013204  Elen_2193  transcriptional regulator, LuxR family  52.08 
 
 
258 aa  52.8  0.000005  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_6272  transcriptional regulator, LuxR family  42.19 
 
 
394 aa  53.1  0.000005  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.486348 
 
 
-
 
NC_013235  Namu_0321  transcriptional regulator, LuxR family  41.67 
 
 
524 aa  52.8  0.000005  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_0348  putative GAF sensor protein  40 
 
 
341 aa  52.8  0.000005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.858795 
 
 
-
 
NC_013595  Sros_4672  response regulator receiver protein  40.74 
 
 
212 aa  53.1  0.000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.223352  normal  0.339353 
 
 
-
 
NC_009436  Ent638_2503  DNA-binding transcriptional activator SdiA  41.82 
 
 
240 aa  53.1  0.000005  Enterobacter sp. 638  Bacteria  hitchhiker  0.000339648  normal  0.514976 
 
 
-
 
NC_009523  RoseRS_3278  two component LuxR family transcriptional regulator  38.36 
 
 
214 aa  52.8  0.000005  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.749326 
 
 
-
 
NC_009524  PsycPRwf_0663  two component LuxR family transcriptional regulator  50.88 
 
 
219 aa  52.8  0.000005  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2623  two component transcriptional regulator, LuxR family  48.28 
 
 
210 aa  52.4  0.000006  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3480  two component transcriptional regulator, LuxR family  48.28 
 
 
210 aa  52.4  0.000006  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.147525 
 
 
-
 
NC_011094  SeSA_A2106  DNA-binding transcriptional activator SdiA  40 
 
 
240 aa  52.4  0.000006  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.010871 
 
 
-
 
NC_011205  SeD_A1293  DNA-binding transcriptional activator SdiA  40 
 
 
240 aa  52.4  0.000006  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.746399  hitchhiker  0.0000202879 
 
 
-
 
NC_009380  Strop_2235  regulatory protein, LuxR  43.33 
 
 
231 aa  52.8  0.000006  Salinispora tropica CNB-440  Bacteria  normal  0.422182  normal 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  41.18 
 
 
226 aa  52.8  0.000006  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013172  Bfae_25060  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.33 
 
 
222 aa  52.4  0.000007  Brachybacterium faecium DSM 4810  Bacteria  normal  0.444591  n/a   
 
 
-
 
NC_007948  Bpro_1874  LuxR family transcriptional regulator  27.27 
 
 
270 aa  52.4  0.000007  Polaromonas sp. JS666  Bacteria  normal  normal  0.818656 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  41.98 
 
 
218 aa  52.4  0.000007  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_011149  SeAg_B1170  DNA-binding transcriptional activator SdiA  40 
 
 
240 aa  52.4  0.000007  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0141324  n/a   
 
 
-
 
NC_013595  Sros_0232  response regulator receiver protein  45.45 
 
 
213 aa  52.4  0.000007  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
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