More than 300 homologs were found in PanDaTox collection
for query gene Gbro_1516 on replicon NC_013441
Organism: Gordonia bronchialis DSM 43247



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013441  Gbro_1516  HAD-superfamily hydrolase, subfamily IA, variant 1  100 
 
 
222 aa  432  1e-120  Gordonia bronchialis DSM 43247  Bacteria  normal  0.122032  n/a   
 
 
-
 
NC_013757  Gobs_4680  HAD-superfamily hydrolase, subfamily IA, variant 1  48.79 
 
 
223 aa  188  5.999999999999999e-47  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_1750  HAD-superfamily hydrolase, subfamily IA, variant 1  47.57 
 
 
237 aa  184  6e-46  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00428028  normal  0.0347073 
 
 
-
 
NC_009664  Krad_0228  HAD-superfamily hydrolase, subfamily IA, variant 1  50.25 
 
 
220 aa  183  2.0000000000000003e-45  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.424895  hitchhiker  0.00464716 
 
 
-
 
NC_008699  Noca_1880  HAD family hydrolase  47.93 
 
 
230 aa  167  2e-40  Nocardioides sp. JS614  Bacteria  normal  0.615565  n/a   
 
 
-
 
NC_013131  Caci_4850  HAD-superfamily hydrolase, subfamily IA, variant 3  44.6 
 
 
229 aa  162  5.0000000000000005e-39  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0298674  normal 
 
 
-
 
NC_008726  Mvan_1937  HAD family hydrolase  42.23 
 
 
234 aa  135  7.000000000000001e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.67763  normal 
 
 
-
 
NC_008146  Mmcs_2746  HAD family hydrolase  39.34 
 
 
240 aa  130  2.0000000000000002e-29  Mycobacterium sp. MCS  Bacteria  normal  0.906764  n/a   
 
 
-
 
NC_008705  Mkms_2790  HAD family hydrolase  39.34 
 
 
240 aa  130  2.0000000000000002e-29  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_2776  HAD family hydrolase  39.34 
 
 
240 aa  130  2.0000000000000002e-29  Mycobacterium sp. JLS  Bacteria  normal  0.223588  normal 
 
 
-
 
NC_010505  Mrad2831_0647  HAD family hydrolase  41.23 
 
 
221 aa  129  4.0000000000000003e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.496334  normal 
 
 
-
 
NC_009338  Mflv_4417  HAD family hydrolase  40 
 
 
232 aa  129  4.0000000000000003e-29  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.155896  normal  0.156136 
 
 
-
 
NC_009484  Acry_0513  HAD family hydrolase  37.62 
 
 
225 aa  125  6e-28  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_5294  HAD family hydrolase  36.49 
 
 
224 aa  124  1e-27  Burkholderia phymatum STM815  Bacteria  normal  normal  0.08015 
 
 
-
 
NC_008541  Arth_3439  HAD family hydrolase  40.89 
 
 
233 aa  124  1e-27  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4411  HAD family hydrolase  38.57 
 
 
224 aa  122  5e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.981308  normal 
 
 
-
 
NC_011886  Achl_3218  HAD-superfamily hydrolase, subfamily IA, variant 3  40.95 
 
 
234 aa  120  1.9999999999999998e-26  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010676  Bphyt_4503  HAD-superfamily hydrolase, subfamily IA, variant 3  38.35 
 
 
224 aa  119  3.9999999999999996e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0822  HAD family hydrolase  37.56 
 
 
224 aa  118  6e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.923988 
 
 
-
 
NC_010557  BamMC406_6309  HAD family hydrolase  37.38 
 
 
224 aa  117  1.9999999999999998e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.403057 
 
 
-
 
NC_010512  Bcenmc03_6102  HAD family hydrolase  37.38 
 
 
224 aa  115  3.9999999999999997e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.524869  normal 
 
 
-
 
NC_008060  Bcen_1317  HAD family hydrolase  37.38 
 
 
224 aa  115  3.9999999999999997e-25  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.716581  n/a   
 
 
-
 
NC_008544  Bcen2424_6512  HAD family hydrolase  37.38 
 
 
224 aa  115  3.9999999999999997e-25  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4472  HAD-superfamily hydrolase, subfamily IA, variant 1  39.32 
 
 
223 aa  115  6e-25  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_008392  Bamb_5583  HAD family hydrolase  37.38 
 
 
224 aa  114  8.999999999999998e-25  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7037  HAD family hydrolase  37.38 
 
 
224 aa  114  1.0000000000000001e-24  Burkholderia sp. 383  Bacteria  normal  normal  0.927677 
 
 
-
 
NC_008148  Rxyl_0174  HAD family hydrolase  39.35 
 
 
215 aa  114  1.0000000000000001e-24  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3991  HAD family hydrolase  37.2 
 
 
223 aa  114  1.0000000000000001e-24  Methylobacterium extorquens PA1  Bacteria  normal  0.0589691  normal  0.286342 
 
 
-
 
NC_009675  Anae109_0220  HAD family hydrolase  40.8 
 
 
238 aa  113  2.0000000000000002e-24  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.208784 
 
 
-
 
NC_010581  Bind_0160  HAD family hydrolase  35.47 
 
 
224 aa  113  2.0000000000000002e-24  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.300128  normal  0.21286 
 
 
-
 
NC_011894  Mnod_1284  HAD-superfamily hydrolase, subfamily IA, variant 3  36.71 
 
 
227 aa  112  4.0000000000000004e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.153215  n/a   
 
 
-
 
NC_009675  Anae109_3310  HAD family hydrolase  35.38 
 
 
232 aa  112  4.0000000000000004e-24  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4360  HAD-superfamily hydrolase, subfamily IA, variant 1  37.68 
 
 
223 aa  112  5e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4249  HAD family hydrolase  35.78 
 
 
224 aa  112  6e-24  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4275  putative haloacid dehalogenase-like hydrolase family protein  36.45 
 
 
224 aa  110  1.0000000000000001e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0625662 
 
 
-
 
NC_007005  Psyr_0131  HAD family hydrolase  32.68 
 
 
224 aa  110  2.0000000000000002e-23  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5624  HAD family hydrolase  36.02 
 
 
228 aa  108  9.000000000000001e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  0.147818  normal  0.407625 
 
 
-
 
NC_004578  PSPTO_0276  hydrolase, haloacid dehalogenase-like family  32.2 
 
 
327 aa  106  3e-22  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.731129  n/a   
 
 
-
 
NC_010581  Bind_2484  HAD family hydrolase  35.75 
 
 
233 aa  105  8e-22  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_3915  HAD family hydrolase  35.07 
 
 
238 aa  104  1e-21  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_2109  HAD-superfamily hydrolase, subfamily IA, variant 3  35.98 
 
 
224 aa  103  2e-21  Methylobacterium populi BJ001  Bacteria  normal  normal  0.546495 
 
 
-
 
NC_008009  Acid345_0033  HAD family hydrolase  36.14 
 
 
228 aa  100  2e-20  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.144848  normal 
 
 
-
 
NC_008025  Dgeo_0689  HAD family hydrolase  39.89 
 
 
229 aa  99.8  3e-20  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.319596 
 
 
-
 
NC_011757  Mchl_2426  HAD-superfamily hydrolase, subfamily IA, variant 3  35.51 
 
 
224 aa  99.8  3e-20  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0132517 
 
 
-
 
NC_010172  Mext_2149  HAD family hydrolase  35.51 
 
 
224 aa  98.2  9e-20  Methylobacterium extorquens PA1  Bacteria  normal  0.376936  normal 
 
 
-
 
NC_013757  Gobs_3959  HAD-superfamily hydrolase, subfamily IA, variant 3  37.38 
 
 
229 aa  89.4  4e-17  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0537  HAD-superfamily hydrolase, subfamily IA, variant 1  32.83 
 
 
260 aa  89  5e-17  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_002936  DET0395  glycoprotease family protein/hydrolase, beta-phosphoglucomutase family  29.58 
 
 
456 aa  77.4  0.0000000000002  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_338  hypothetical protein  29.11 
 
 
456 aa  75.9  0.0000000000004  Dehalococcoides sp. VS  Bacteria  hitchhiker  0.00693249  n/a   
 
 
-
 
NC_009455  DehaBAV1_0374  HAD family hydrolase  29.67 
 
 
456 aa  74.7  0.0000000000009  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000852801  n/a   
 
 
-
 
NC_010172  Mext_0280  HAD family hydrolase  31.75 
 
 
233 aa  68.9  0.00000000005  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0323  HAD-superfamily hydrolase, subfamily IA, variant 1  31.75 
 
 
233 aa  69.3  0.00000000005  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0341719 
 
 
-
 
NC_008789  Hhal_2083  phosphoglycolate phosphatase  31.31 
 
 
226 aa  67.4  0.0000000001  Halorhodospira halophila SL1  Bacteria  normal  0.609164  n/a   
 
 
-
 
NC_010725  Mpop_0356  HAD-superfamily hydrolase, subfamily IA, variant 1  31.75 
 
 
233 aa  65.9  0.0000000005  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0811  HAD-superfamily hydrolase, subfamily IA, variant 3  27.52 
 
 
225 aa  63.5  0.000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.332678 
 
 
-
 
NC_007802  Jann_0734  HAD family hydrolase  27.96 
 
 
241 aa  63.9  0.000000002  Jannaschia sp. CCS1  Bacteria  normal  0.879574  normal 
 
 
-
 
NC_008340  Mlg_2251  phosphoglycolate phosphatase  29.9 
 
 
229 aa  63.9  0.000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_0071  Beta-phosphoglucomutase hydrolase  24 
 
 
234 aa  62.4  0.000000005  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0853  HAD family hydrolase  29.51 
 
 
221 aa  62.4  0.000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0114666 
 
 
-
 
NC_010424  Daud_0525  HAD family hydrolase  27.32 
 
 
209 aa  62.4  0.000000005  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.00124351  n/a   
 
 
-
 
NC_013216  Dtox_2255  HAD-superfamily hydrolase, subfamily IA, variant 3  25.6 
 
 
209 aa  62.4  0.000000006  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.00490459 
 
 
-
 
NC_013526  Tter_2485  HAD-superfamily hydrolase, subfamily IA, variant 3  30.22 
 
 
238 aa  61.6  0.000000008  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_1752  HAD-superfamily hydrolase, subfamily IA, variant 1  31.6 
 
 
216 aa  61.2  0.00000001  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1198  phosphoglycolate phosphatase  34.38 
 
 
223 aa  61.2  0.00000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.042458  n/a   
 
 
-
 
NC_007643  Rru_A2658  haloacid dehalogenase-like hydrolase  32.41 
 
 
236 aa  60.8  0.00000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2101  HAD family hydrolase  30.32 
 
 
231 aa  60.1  0.00000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2097  HAD-superfamily hydrolase, subfamily IA, variant 3  28.57 
 
 
221 aa  60.5  0.00000002  Clostridium cellulolyticum H10  Bacteria  normal  0.284323  n/a   
 
 
-
 
NC_009441  Fjoh_2777  HAD family hydrolase  22.97 
 
 
220 aa  59.3  0.00000004  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0810098  n/a   
 
 
-
 
NC_009802  CCC13826_0740  hypothetical protein  30.64 
 
 
212 aa  59.3  0.00000004  Campylobacter concisus 13826  Bacteria  normal  0.347846  n/a   
 
 
-
 
NC_010625  Bphy_5953  phosphoglycolate phosphatase  29.52 
 
 
257 aa  58.5  0.00000007  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0174691 
 
 
-
 
NC_011059  Paes_0868  HAD-superfamily hydrolase, subfamily IA, variant 1  29.17 
 
 
227 aa  58.5  0.00000008  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.00000353752  normal  0.072442 
 
 
-
 
NC_007333  Tfu_2488  HAD family hydrolase  27.27 
 
 
237 aa  57.8  0.0000001  Thermobifida fusca YX  Bacteria  normal  0.271509  n/a   
 
 
-
 
NC_010003  Pmob_0452  HAD family hydrolase  26.92 
 
 
221 aa  57.8  0.0000001  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_2054  phosphoglycolate phosphatase  29.52 
 
 
225 aa  58.2  0.0000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.203866 
 
 
-
 
NC_013946  Mrub_2205  HAD-superfamily hydrolase subfamily IA, variant 3  25.6 
 
 
228 aa  57.8  0.0000001  Meiothermus ruber DSM 1279  Bacteria  normal  0.322675  normal 
 
 
-
 
NC_013205  Aaci_2469  HAD-superfamily hydrolase, subfamily IA, variant 3  25.62 
 
 
224 aa  57  0.0000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.618161  n/a   
 
 
-
 
NC_007778  RPB_3387  phosphoglycolate phosphatase  29.9 
 
 
225 aa  57.4  0.0000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0781845 
 
 
-
 
NC_013730  Slin_0136  HAD-superfamily hydrolase, subfamily IA, variant 3  26.58 
 
 
225 aa  57  0.0000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0876  HAD-superfamily hydrolase, subfamily IA, variant 3  28.95 
 
 
215 aa  57  0.0000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008639  Cpha266_2701  beta-phosphoglucomutase family hydrolase  26.98 
 
 
232 aa  57.4  0.0000002  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_4626  HAD family hydrolase  29.19 
 
 
213 aa  56.6  0.0000003  Opitutus terrae PB90-1  Bacteria  normal  0.317625  normal 
 
 
-
 
NC_013730  Slin_0267  HAD-superfamily hydrolase, subfamily IA, variant 3  25.43 
 
 
220 aa  56.2  0.0000003  Spirosoma linguale DSM 74  Bacteria  normal  0.583067  normal  0.103324 
 
 
-
 
NC_010320  Teth514_2198  beta-phosphoglucomutase  27.54 
 
 
215 aa  56.6  0.0000003  Thermoanaerobacter sp. X514  Bacteria  normal  0.102511  n/a   
 
 
-
 
NC_010655  Amuc_1509  HAD-superfamily hydrolase, subfamily IA, variant 3  28.37 
 
 
231 aa  56.6  0.0000003  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  hitchhiker  0.000193428 
 
 
-
 
NC_010505  Mrad2831_0854  HAD family hydrolase  32.2 
 
 
221 aa  56.2  0.0000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.249022  decreased coverage  0.000200034 
 
 
-
 
NC_011004  Rpal_4817  HAD-superfamily hydrolase, subfamily IA, variant 3  27.54 
 
 
235 aa  56.2  0.0000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.821962  n/a   
 
 
-
 
NC_010803  Clim_2483  beta-phosphoglucomutase family hydrolase  25.84 
 
 
233 aa  55.8  0.0000004  Chlorobium limicola DSM 245  Bacteria  normal  0.0678579  n/a   
 
 
-
 
NC_007908  Rfer_2702  HAD family hydrolase  27.85 
 
 
232 aa  55.8  0.0000004  Rhodoferax ferrireducens T118  Bacteria  normal  0.653691  n/a   
 
 
-
 
NC_007973  Rmet_1517  HAD family hydrolase  29.1 
 
 
272 aa  55.8  0.0000004  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00550293  decreased coverage  0.0000688846 
 
 
-
 
NC_004578  PSPTO_3590  HAD-superfamily hydrolase  27.75 
 
 
218 aa  55.8  0.0000005  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.906124  n/a   
 
 
-
 
NC_007355  Mbar_A0742  beta-phosphoglucomutase  28.17 
 
 
214 aa  55.8  0.0000005  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_010581  Bind_1313  HAD family hydrolase  30.19 
 
 
232 aa  55.8  0.0000005  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.95229 
 
 
-
 
NC_008599  CFF8240_0391  phosphoglycolate phosphatase  28.98 
 
 
216 aa  55.8  0.0000005  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_0484  HAD-superfamily hydrolase, subfamily IA, variant 1  27.45 
 
 
218 aa  55.5  0.0000006  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0822  HAD family hydrolase  29.61 
 
 
396 aa  55.1  0.0000007  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0414  HAD-superfamily hydrolase, subfamily IA, variant 3  25.59 
 
 
217 aa  55.1  0.0000008  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2768  HAD family hydrolase  30.33 
 
 
237 aa  55.1  0.0000009  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.654297  normal  0.45248 
 
 
-
 
NC_011894  Mnod_1296  phosphoglycolate phosphatase  28.17 
 
 
233 aa  55.1  0.0000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0205291  n/a   
 
 
-
 
NC_011898  Ccel_3242  beta-phosphoglucomutase  27.81 
 
 
219 aa  54.3  0.000001  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3547  phosphoglycolate phosphatase  28.02 
 
 
238 aa  54.7  0.000001  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
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