| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5953 |
|---|
| Symbol | |
|---|
| ID | 6247525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010625 |
|---|
| Strand | + |
|---|
| Start bp | 476498 |
|---|
| End bp | 477271 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642597661 |
|---|
| Product | phosphoglycolate phosphatase |
|---|
| Protein accession | YP_001862063 |
|---|
| Protein GI | 186470745 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0174691 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTCA TGCCGCGCAA TTTGCCGATC GATGCCGTGC TGTTCGATCT CGACGGCACG
CTGTTGCATA CATCGCCGGA TATCGGCAAT GCGCTCAACC GCGCACTGGC CGAAAACGGC
CTTCCGCTGC TCGCGCCAGG CGTCGCGCAG ACGCTGATCG GCGGCGGCTC CGAAATTCTC
GTCGACCGCG CGTTGACGCT GCTGGGCGTC GAGTCGCGAC CCGCGACGCT CGATCTCGTG
CTGCGCCGTT ACGAGTCCTG CTATCACCAG ATCTGCCGCG GCGAGGACCA GTTGACGCAG
CCGTATCCCG GCGCTGAAGC GACGCTGGAC AGCCTGCGCG GCATGGGACT CAAGCTCGGT
CTCGTCACCA ACAAGGAGAC GCGTTTCGTC GATCCGCTGA TGTGGCGCTT CGGTTTGCAG
GCATGGTTCG ACATGGTCGT CGACGGCAAC GCGCGGCTGC CGCGCAAGCC GGATCCCGAA
CCGCTGCTGC ACGCATGCGA AGCGCTCGGT GTCGATCCCG CGCACACGCT TTTCGTCGGC
GATTCGGTGA CGGACGCCCT CGCGGCGCAG GCTGCGGGAA TGCCGATGGT CTGCGTCAGC
TACGGATACA GCAGCGATCA TCCCGTGACC GAACTGCCGT GCATGCGCGT GATCGACAGC
ATCGGCGAAT TGACGGAGCT GATCGGCGGT CCCCGCAAAT GGCATCGTCC GACACGCGGC
GATCACGCTG CCGCGGGGAT GGACATGCAG ATGCACTCGC ACCTGGCGAA CTGA
|
|---|
| Protein sequence | MQVMPRNLPI DAVLFDLDGT LLHTSPDIGN ALNRALAENG LPLLAPGVAQ TLIGGGSEIL
VDRALTLLGV ESRPATLDLV LRRYESCYHQ ICRGEDQLTQ PYPGAEATLD SLRGMGLKLG
LVTNKETRFV DPLMWRFGLQ AWFDMVVDGN ARLPRKPDPE PLLHACEALG VDPAHTLFVG
DSVTDALAAQ AAGMPMVCVS YGYSSDHPVT ELPCMRVIDS IGELTELIGG PRKWHRPTRG
DHAAAGMDMQ MHSHLAN
|
|---|
| |