Gene Rmet_1517 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_1517 
Symbol 
ID4038320 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp1639030 
End bp1639848 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content71% 
IMG OID637976901 
ProductHAD family hydrolase 
Protein accessionYP_583669 
Protein GI94310459 
COG category[R] General function prediction only 
COG ID[COG0637] Predicted phosphatase/phosphohexomutase 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00550293 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000688846 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACCACCG GAACGGCGGC AAGACCCAAG CTCGAGGCGC TGCTGTGGGA CGTCGACGGC 
ACCCTCGCCG AGACCGAGCG CGACGGGCAT CGGGTCGCGT TCAACCTCGC CTTCGAGGCC
TTCGGCCTGC CTTGGCGTTG GGACGATGCG CGCTATGGCG AGCTCCTGCG CGTGACCGGC
GGGCGCGAGC GCCTGATGCA CGACATGGAC AGCCGGCCCG ACGCACCGCC CATGGCGAGC
GAGCGCGATG CGCTGGCGCG CGCGCTGCAC GCGAAGAAGA ACACCTTGTA TGCTGAACTG
GTTGCCGATG CCGGCATTCC GCTGCGCGAC GGCGTTCTGG AACTGATGCG CGAGTGCCGC
GACCACGGCG TGCGCATGGC CGTCGCCACG ACCACCAGCC GCTCCAACCT CGAAGCCTTG
TTGCGCAAGC ACATGGGCAA CCGGTGGGCC GGCTGGTTCG GTGCCATCGT GTGCGGCGAG
GACGTGGAGC GCAAGAAGCC CGATCCCGAG GTCTTCGTCA AGGCCTTGCG GGCGCTGGGC
GTCGGCCCAC ACCAGGCCGT CGCCATCGAA GACTCGCCCG GCGGCGTGGC GGCGGCGCGC
GCCGCCGATT GCCCGGTGGT GGTCACCCGC AGCTTCTACT TCGCCAAGGC ACCGATCGAG
GGTGCCATCG CCGTCGGCCC CGGCCTGCAC GCCCGCGAGG GCTGGCGCCC GGCGCTGGCC
GCGCGGGTGA AGCCGCCGCA GTCGCAGGGG CAGCGCGTCG GCCTCGCCGA CATCGCCGAC
TGGTTTGCGC AACGGGACAC GATCTGCGAC TACCCGTAG
 
Protein sequence
MTTGTAARPK LEALLWDVDG TLAETERDGH RVAFNLAFEA FGLPWRWDDA RYGELLRVTG 
GRERLMHDMD SRPDAPPMAS ERDALARALH AKKNTLYAEL VADAGIPLRD GVLELMRECR
DHGVRMAVAT TTSRSNLEAL LRKHMGNRWA GWFGAIVCGE DVERKKPDPE VFVKALRALG
VGPHQAVAIE DSPGGVAAAR AADCPVVVTR SFYFAKAPIE GAIAVGPGLH AREGWRPALA
ARVKPPQSQG QRVGLADIAD WFAQRDTICD YP