Gene PSPTO_0276 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_0276 
Symbol 
ID1181884 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp302698 
End bp303681 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content58% 
IMG OID637391645 
Producthydrolase, haloacid dehalogenase-like family 
Protein accessionNP_790127 
Protein GI28867508 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.731129 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAGGCTT TCGCCCTCGT TTCCCTGGGC CAGCGGATTT ACCATACGGA TAGTCGCAGT 
TATCGTCAAC GCGGCTCCCC TATCATCCGG CAAACCTGCC TCCCGCCCAA AAGATCGAAC 
CCCCAACCCA TCAAGCACTC GAAAACGTGT GACCTCAAAA CTCGACCCTT TTCCCTCCGT 
CTGGCATCGC CGTATTTAAA GCCTTGGCTA AGCCCTGGGA TCGCTGCATT TCCGACACCG 
ACGCTCACGT GTCGCCGAAG GCTTCAGACC TCGCCAGACG GCCAACCCGA ATTGAAAAAG 
AGTAACCCTA TGAGACCCCA AACCTCCTTC ATCTTCGACC TCGACGGCAC CCTGACCGAC 
AGCGTCTACC AAAACGTCGC TGCCTGGAAA GAAGCACTGG ACGCAGAAAA TATCCCGCTC 
GCGATGTGGC GTATCCATCG CAAGATCGGC ATGAGCGGCG GGCTGATGTT GAAGTCGTTG 
TCGCGTGAAA CCGGCATGAG CATTACCGAT GAGCAAGCCG AGCGGCTCAG CGAAAAGCAT 
GCGCAGGCGT ACGAGCGGTT GCAGCATCAG ATCATTGCGC TGCCGGGTGC GGTCGAGTTG 
CTTGAGACGC TCGACAAGGA GAACCTCAAG TGGTGCATCG CCACGAGCGG CGGGATTGAT 
ACGGCGACGA TCAATCTGAA GGCGCTGAAG CTGGACATCA ATAAGATCAA CATTGTTACG 
CGCGATGACG TGAGTTACGG CAAGCCGGAC CCGGACCTGT TCCTGGCGGC GGCGAAGAAG 
ATCGGCGCTC CGATTGATGA ATGCCTGGTG ATCGGCGATG CGATCTGGGA CATGCTGGCG 
GCGCGTCGCT GCAAGGCGAC CGGCGTCGGC CTGCTTTCGG GTGGCTATGA CATCGGCGAG 
CTTGAGCGGG CGGGTGCCTT GAGGGTGTAC GAGGACCCGC TGGATCTGCT GAATCATCTG 
GACGAGATTG CTTCACGTCC TTGA
 
Protein sequence
MEAFALVSLG QRIYHTDSRS YRQRGSPIIR QTCLPPKRSN PQPIKHSKTC DLKTRPFSLR 
LASPYLKPWL SPGIAAFPTP TLTCRRRLQT SPDGQPELKK SNPMRPQTSF IFDLDGTLTD 
SVYQNVAAWK EALDAENIPL AMWRIHRKIG MSGGLMLKSL SRETGMSITD EQAERLSEKH 
AQAYERLQHQ IIALPGAVEL LETLDKENLK WCIATSGGID TATINLKALK LDINKINIVT 
RDDVSYGKPD PDLFLAAAKK IGAPIDECLV IGDAIWDMLA ARRCKATGVG LLSGGYDIGE 
LERAGALRVY EDPLDLLNHL DEIASRP