Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0853 |
Symbol | |
ID | 5538319 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1115948 |
End bp | 1116613 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640893004 |
Product | HAD family hydrolase |
Protein accession | YP_001430987 |
Protein GI | 156740858 |
COG category | [R] General function prediction only |
COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0114666 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCCTT TTACTGCCGC TATCTTCGAC ATGGATGGCA CCCTGCTCAA CAATATGCCG CTCTACTACG CAGCGTTTCG GATATTCATC GAGCGACACG GCCTGCGCCC GCCGCCGCCG TTCGAAGCCA TCCGACTGAT CGGCATGCGG CAGAGCGATA TTTTTCCGGC GCTCTTTGGG CGCACATTGA CGCCGGAAGA GATAGCGCAC TACAGCGCCG AAGCCGGAAC GATCTACCGT GAGATGCTGG CAGGCGTTAC GCCACTGCCA GGGCTGCTGC GCTTCCTCGA TCTGCTCGAG CAACGGCAGG TGCGCATCGC GCTGGCCACA TCCGCTCCCA GAGACAATGT TGCTCCAACA CTCGAGGCGC TGGGCATCGC CGACCGGTTT GCCGCCATCA CGCTTGGCGA AGAAGTGCCG CGCGGCAAGC CCGCGCCCGA CATCTTCCTC GAAGCGGCGC AGCGCATCGA GCGCCCAGCC GAATGCTGCG TGGTCTTTGA GGACTCGTTC GCCGGCATTG CCGCAGCGCG CGCCGCCGGG ATGCGCTGCA TTGCGCTGGC AACTACCCAC TCCGCCGACG ACCTGCGCGC TGCCGATCCC GACCTGATCG TCGCCGATTA CGACGAATTG CTCCGCATGA CTCCTCTGCT GTTTCCCTCG CTCTGA
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Protein sequence | MQPFTAAIFD MDGTLLNNMP LYYAAFRIFI ERHGLRPPPP FEAIRLIGMR QSDIFPALFG RTLTPEEIAH YSAEAGTIYR EMLAGVTPLP GLLRFLDLLE QRQVRIALAT SAPRDNVAPT LEALGIADRF AAITLGEEVP RGKPAPDIFL EAAQRIERPA ECCVVFEDSF AGIAAARAAG MRCIALATTH SADDLRAADP DLIVADYDEL LRMTPLLFPS L
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