| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_2083 |
|---|
| Symbol | |
|---|
| ID | 4710087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 2286876 |
|---|
| End bp | 2287556 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639856557 |
|---|
| Product | phosphoglycolate phosphatase |
|---|
| Protein accession | YP_001003649 |
|---|
| Protein GI | 121998862 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.609164 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTCT CGCTAACCCG CGCGATTCTC TTCGATCTGG ACGGGACGCT GGTGGACAGC
GCCCCGGATC TGACCGTCGC CATCAACCAG GTGCTCGCCG AGCGGGACCA CGCCCCGGTG
ACCGAGGAGC AGGTCCGCGG TTGGGTGGGC AATGGTGCCC GTCGGCTGGT GGCCCGCGCC
CTCACCGGCG CGGACGACGG CAACCCGCCA GAAGAGGAGC TGGACGCCGC GCTCGAGCGC
TTCTTCGAGT GCTACGGCGA GGCCGTCTAC GTACACAGCC GCCCCTACCC GGAGGCCGTC
GAGACCCTGC AGGCCCTGGC CCAGGCCGGC ATGCGTCTGG CCGTGGTCAC CAACAAGCCG
CGGCGCTTCG CCGAGCCGAT CCTCCAGGGC ATGGGGGTGA CGGATGCCAT CGACGTGGTC
GTTGGCGGCG AGTGCACCGA GGCCCGCAAG CCCGACCCGG AGCCGCTCCG GCTGGCCATG
GAGCGCCTGG GGGCGGCGTC GCGGACCGTG CTGATGGTCG GTGACTCGCG AACCGACGTG
GAGGCGGCGC GCAACGCCGG TATTCCGGTG GTGTGTGTGC CCTACGGCTA CCGCCGCGGG
GTGGCGCTGG AAGACCTGGG CGCCGACGCC ATCGTGGATG ATCTCAGCGG CGTGGTCGCG
CTGCTACGCG AGGCGGCCTG A
|
|---|
| Protein sequence | MDLSLTRAIL FDLDGTLVDS APDLTVAINQ VLAERDHAPV TEEQVRGWVG NGARRLVARA
LTGADDGNPP EEELDAALER FFECYGEAVY VHSRPYPEAV ETLQALAQAG MRLAVVTNKP
RRFAEPILQG MGVTDAIDVV VGGECTEARK PDPEPLRLAM ERLGAASRTV LMVGDSRTDV
EAARNAGIPV VCVPYGYRRG VALEDLGADA IVDDLSGVVA LLREAA
|
|---|
| |