| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0414 |
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| Symbol | |
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| ID | 8413263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 478840 |
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| End bp | 479493 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 645021982 |
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| Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
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| Protein accession | YP_003179436 |
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| Protein GI | 257784219 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTATA AAGCCGCTGT TTTTGATCTT GATGGCACAT TACTCAACAC TATAGATGAT
CTTGCTTGGG CAACAAATTA TGCCCTCAAG CAATTTAATA TGCCTACTTA TACTGTTGAT
GAGGTACGTC AAATGGTTGG AAATGGAGTT GCAAAACTAA TTCGCGATGC TGTACCAGAA
GATACAGATG ACGCAACATA TCAGCAAGTA CTTGCATGCT TTAAAGAACA TTACGCTGAC
CATAGCCTAG ATAATACTGT ACCCTACCCT GGCATTCTTG ATGCTATTGA CATTCTAAAA
GCGGCAGGGG TCAAATGTGC GGTTGTTTCA AACAAACCAA ATTTTGCCAT TGCAGATTTA
ATGAAAAATT TCTTTCCCGG AAGATTTGAC TTTGCTCTTG GACAACGCAA TGACTTAAAA
AGAAAGCCAG ATGCAGAACC CGTACACTAC ACTCTGGCTC AAATTGGCGT TAACCCTAAA
GATGCTGTTT ATATTGGAGA TTCTGAAGTT GATGTTAAAA CAGCACAAAA CAGCAACATG
CCATGCATTA GTGTTACCTG GGGATTTAGA GATAAAGATA CACTTCTAGC TGCAGGAGCA
ACTACACTAG TAGATACTGC AGATGAGATG GTACAGAAGA TTCTTAACAA TTAA
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| Protein sequence | MSYKAAVFDL DGTLLNTIDD LAWATNYALK QFNMPTYTVD EVRQMVGNGV AKLIRDAVPE
DTDDATYQQV LACFKEHYAD HSLDNTVPYP GILDAIDILK AAGVKCAVVS NKPNFAIADL
MKNFFPGRFD FALGQRNDLK RKPDAEPVHY TLAQIGVNPK DAVYIGDSEV DVKTAQNSNM
PCISVTWGFR DKDTLLAAGA TTLVDTADEM VQKILNN
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