More than 300 homologs were found in PanDaTox collection
for query gene Cpin_1493 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_1493  transcriptional regulator, LuxR family  100 
 
 
198 aa  411  1e-114  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1579  two component LuxR family transcriptional regulator  29.76 
 
 
242 aa  81.6  0.000000000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0938  two component LuxR family transcriptional regulator  29.27 
 
 
242 aa  80.5  0.00000000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0710  two component LuxR family transcriptional regulator  28.28 
 
 
240 aa  80.5  0.00000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_3102  two component transcriptional regulator, LuxR family  30 
 
 
222 aa  80.5  0.00000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.774177  normal  0.15342 
 
 
-
 
NC_009523  RoseRS_4323  two component LuxR family transcriptional regulator  32.65 
 
 
246 aa  80.1  0.00000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.239635  normal  0.317944 
 
 
-
 
NC_009767  Rcas_4428  two component LuxR family transcriptional regulator  35.26 
 
 
231 aa  79.3  0.00000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0724  two component transcriptional regulator, LuxR family  31.46 
 
 
210 aa  77.4  0.0000000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.836709 
 
 
-
 
NC_013595  Sros_4744  response regulator receiver protein  28.81 
 
 
209 aa  75.5  0.0000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.620464  normal  0.690137 
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  28.06 
 
 
218 aa  73.9  0.000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  30.48 
 
 
226 aa  74.3  0.000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_0020  two component transcriptional regulator, LuxR family  32.98 
 
 
229 aa  73.9  0.000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_19700  two component transcriptional regulator, LuxR family  29.21 
 
 
209 aa  73.6  0.000000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1616  response regulator receiver  29.82 
 
 
210 aa  73.2  0.000000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.869432  normal 
 
 
-
 
NC_006274  BCZK3023  response regulator  29.95 
 
 
597 aa  71.6  0.000000000007  Bacillus cereus E33L  Bacteria  decreased coverage  0.000011368  n/a   
 
 
-
 
NC_013132  Cpin_4160  two component transcriptional regulator, LuxR family  26.96 
 
 
215 aa  69.3  0.00000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0201669  normal  0.0925574 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  27.75 
 
 
223 aa  69.3  0.00000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  27.98 
 
 
236 aa  68.9  0.00000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  29.31 
 
 
222 aa  68.9  0.00000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_007498  Pcar_0978  two component signal transduction response regulator  27.13 
 
 
223 aa  68.6  0.00000000005  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0402933  n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  28.07 
 
 
228 aa  68.6  0.00000000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_4039  two component LuxR family transcriptional regulator  29.24 
 
 
250 aa  68.6  0.00000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.512873  n/a   
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  28.65 
 
 
218 aa  68.6  0.00000000006  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  23.27 
 
 
211 aa  68.6  0.00000000007  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0337978 
 
 
-
 
NC_002939  GSU3229  LuxR family DNA-binding response regulator  26.47 
 
 
229 aa  66.6  0.0000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_00310  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  25.68 
 
 
213 aa  66.6  0.0000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  28.99 
 
 
216 aa  66.2  0.0000000003  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0722  two component transcriptional regulator, LuxR family  27.95 
 
 
206 aa  66.2  0.0000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.511528  normal  0.608348 
 
 
-
 
NC_011899  Hore_20540  regulatory protein LuxR  45.45 
 
 
887 aa  65.9  0.0000000004  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3486  hypothetical protein  28.73 
 
 
206 aa  65.1  0.0000000006  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3851  two component LuxR family transcriptional regulator  27.14 
 
 
227 aa  65.1  0.0000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008527  LACR_0967  DNA-binding response regulator  31.14 
 
 
209 aa  65.1  0.0000000006  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.598364  n/a   
 
 
-
 
NC_013947  Snas_4871  two component transcriptional regulator, LuxR family  27.37 
 
 
222 aa  65.1  0.0000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.134443  normal  0.31614 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  30.85 
 
 
228 aa  64.3  0.000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0186  response regulator receiver protein  28.57 
 
 
213 aa  64.3  0.000000001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000327076  n/a   
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  27.81 
 
 
207 aa  63.9  0.000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  29.24 
 
 
207 aa  63.5  0.000000002  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_013947  Snas_3811  two component transcriptional regulator, LuxR family  42.19 
 
 
206 aa  63.9  0.000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00252848 
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  27.41 
 
 
237 aa  63.5  0.000000002  Frankia sp. CcI3  Bacteria  normal  0.272345  normal 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  28.81 
 
 
224 aa  63.9  0.000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  27.27 
 
 
213 aa  63.9  0.000000002  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  29.24 
 
 
207 aa  63.5  0.000000002  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_009719  Plav_1134  two component LuxR family transcriptional regulator  24.72 
 
 
213 aa  62.8  0.000000003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  29.88 
 
 
216 aa  62.4  0.000000004  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  27.37 
 
 
230 aa  62.4  0.000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1104  two component LuxR family transcriptional regulator  25.14 
 
 
218 aa  62  0.000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.348687  n/a   
 
 
-
 
NC_009767  Rcas_2258  two component LuxR family transcriptional regulator  28 
 
 
254 aa  62  0.000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  hitchhiker  0.00245701 
 
 
-
 
NC_007498  Pcar_1400  two component signal transduction response regulator  24.55 
 
 
214 aa  62  0.000000006  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0036  two component LuxR family transcriptional regulator  25.95 
 
 
221 aa  61.6  0.000000006  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0464925  n/a   
 
 
-
 
NC_008148  Rxyl_0882  LuxR family transcriptional regulator  49.18 
 
 
253 aa  61.6  0.000000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_374  DNA-binding response regulator, LuxR family  25 
 
 
232 aa  61.6  0.000000007  Dehalococcoides sp. VS  Bacteria  hitchhiker  0.0000120759  n/a   
 
 
-
 
NC_013132  Cpin_2357  two component transcriptional regulator, LuxR family  27.16 
 
 
234 aa  61.6  0.000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009455  DehaBAV1_0409  two component LuxR family transcriptional regulator  27.22 
 
 
232 aa  61.6  0.000000007  Dehalococcoides sp. BAV1  Bacteria  normal  0.135269  n/a   
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  30.53 
 
 
234 aa  61.2  0.000000008  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_007974  Rmet_4986  two component LuxR family transcriptional regulator  53.12 
 
 
237 aa  61.6  0.000000008  Cupriavidus metallidurans CH34  Bacteria  normal  0.170484  normal  0.313407 
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  27.78 
 
 
233 aa  61.2  0.000000008  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  26.06 
 
 
226 aa  61.2  0.000000008  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_007410  Ava_B0209  two component LuxR family transcriptional regulator  25 
 
 
223 aa  61.2  0.000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0432  LuxR family DNA-binding response regulator  24.47 
 
 
232 aa  60.8  0.00000001  Dehalococcoides ethenogenes 195  Bacteria  hitchhiker  0.00543066  n/a   
 
 
-
 
NC_011094  SeSA_A1489  EsrB  28.82 
 
 
212 aa  60.8  0.00000001  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.121116  normal  0.320198 
 
 
-
 
NC_007413  Ava_0661  two component LuxR family transcriptional regulator  31.58 
 
 
239 aa  60.5  0.00000001  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.0000223942  normal  0.0624831 
 
 
-
 
NC_011831  Cagg_2359  two component transcriptional regulator, LuxR family  25.14 
 
 
247 aa  61.2  0.00000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0990205  decreased coverage  0.00133027 
 
 
-
 
NC_011083  SeHA_C1526  two-component response regulator EsrB  28.82 
 
 
212 aa  60.8  0.00000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.577557  hitchhiker  0.00169027 
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  25 
 
 
216 aa  61.2  0.00000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  26.46 
 
 
236 aa  60.5  0.00000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_009523  RoseRS_1633  two component LuxR family transcriptional regulator  28.65 
 
 
254 aa  60.8  0.00000001  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A1950  hypothetical protein  28.82 
 
 
212 aa  60.8  0.00000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.0094858 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  30.18 
 
 
225 aa  60.8  0.00000001  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  28.4 
 
 
207 aa  60.5  0.00000002  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_011886  Achl_3380  two component transcriptional regulator, LuxR family  26.79 
 
 
222 aa  60.5  0.00000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011729  PCC7424_1418  two component transcriptional regulator, LuxR family  48.39 
 
 
249 aa  60.5  0.00000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011830  Dhaf_2789  two component transcriptional regulator, LuxR family  28.99 
 
 
212 aa  60.5  0.00000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.246733  n/a   
 
 
-
 
NC_010718  Nther_0747  two component transcriptional regulator, LuxR family  25.42 
 
 
232 aa  60.1  0.00000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.643618  normal  0.38139 
 
 
-
 
NC_009972  Haur_4341  two component LuxR family transcriptional regulator  26.35 
 
 
343 aa  60.1  0.00000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1971  two component transcriptional regulator, LuxR family  25.89 
 
 
216 aa  59.7  0.00000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_014248  Aazo_0930  LuxR family two component transcriptional regulator  45.31 
 
 
240 aa  60.5  0.00000002  'Nostoc azollae' 0708  Bacteria  normal  0.545376  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  26.52 
 
 
211 aa  60.5  0.00000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  26.9 
 
 
237 aa  60.5  0.00000002  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_011146  Gbem_2253  two component transcriptional regulator, LuxR family  24.37 
 
 
216 aa  60.1  0.00000002  Geobacter bemidjiensis Bem  Bacteria  normal  0.174263  n/a   
 
 
-
 
NC_013739  Cwoe_4753  two component transcriptional regulator, LuxR family  27.17 
 
 
201 aa  59.7  0.00000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.226774 
 
 
-
 
NC_013595  Sros_0827  response regulator receiver protein  38.46 
 
 
217 aa  60.1  0.00000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3813  putative transcriptional regulator  26.32 
 
 
200 aa  59.7  0.00000003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C3921  putative transcriptional regulator  26.32 
 
 
200 aa  59.7  0.00000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A3800  putative transcriptional regulator  26.32 
 
 
200 aa  59.7  0.00000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1563  two component LuxR family transcriptional regulator  25 
 
 
257 aa  59.3  0.00000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.781509  n/a   
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  25.27 
 
 
214 aa  59.3  0.00000003  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_011884  Cyan7425_4561  two component transcriptional regulator, LuxR family  28.66 
 
 
217 aa  59.7  0.00000003  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_0164  two component transcriptional regulator, LuxR family  45.31 
 
 
234 aa  59.7  0.00000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0441129 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  24.48 
 
 
303 aa  59.3  0.00000003  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.887336 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  27.27 
 
 
213 aa  59.7  0.00000003  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  27.78 
 
 
230 aa  59.3  0.00000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  28.27 
 
 
234 aa  59.3  0.00000003  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.336237 
 
 
-
 
NC_013161  Cyan8802_1954  two component transcriptional regulator, LuxR family  26.67 
 
 
221 aa  58.9  0.00000004  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.682063 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  27.11 
 
 
238 aa  58.9  0.00000004  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_007908  Rfer_0894  two component LuxR family transcriptional regulator  28.24 
 
 
217 aa  58.9  0.00000004  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2848  two component transcriptional regulator, LuxR family  26.92 
 
 
212 aa  59.3  0.00000004  Meiothermus silvanus DSM 9946  Bacteria  normal  0.857037  normal  0.944506 
 
 
-
 
NC_011726  PCC8801_1927  two component transcriptional regulator, LuxR family  26.67 
 
 
221 aa  58.9  0.00000004  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_012803  Mlut_18530  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  25 
 
 
209 aa  59.3  0.00000004  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  43.48 
 
 
217 aa  59.3  0.00000004  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  29.12 
 
 
218 aa  59.3  0.00000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
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