More than 300 homologs were found in PanDaTox collection
for query gene Sked_19470 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_19470  short-chain dehydrogenase of unknown substrate specificity  100 
 
 
287 aa  555  1e-157  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_27130  short-chain dehydrogenase of unknown substrate specificity  53.94 
 
 
258 aa  221  9.999999999999999e-57  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_35320  short-chain dehydrogenase of unknown substrate specificity  50.6 
 
 
249 aa  215  7e-55  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.135035  normal  0.316469 
 
 
-
 
NC_012669  Bcav_3647  short-chain dehydrogenase/reductase SDR  50.2 
 
 
255 aa  212  4.9999999999999996e-54  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1466  short-chain dehydrogenase/reductase SDR  46.94 
 
 
253 aa  210  2e-53  Nocardioides sp. JS614  Bacteria  normal  0.0605466  n/a   
 
 
-
 
NC_013172  Bfae_25790  short-chain dehydrogenase of unknown substrate specificity  46.96 
 
 
282 aa  209  5e-53  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2979  short-chain dehydrogenase/reductase SDR  48.37 
 
 
269 aa  205  7e-52  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_05610  short-chain dehydrogenase of unknown substrate specificity  45.83 
 
 
296 aa  204  2e-51  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.100134  normal  0.886117 
 
 
-
 
NC_013174  Jden_2426  short-chain dehydrogenase/reductase SDR  45.52 
 
 
269 aa  202  7e-51  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.316114 
 
 
-
 
NC_013530  Xcel_3148  short-chain dehydrogenase/reductase SDR  48.43 
 
 
259 aa  199  3e-50  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1004  short-chain dehydrogenase/reductase SDR  46.36 
 
 
276 aa  193  3e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.118299  decreased coverage  0.00158374 
 
 
-
 
NC_013159  Svir_38500  short-chain dehydrogenase of unknown substrate specificity  48.03 
 
 
253 aa  192  5e-48  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_2195  short-chain dehydrogenase/reductase SDR  46.8 
 
 
250 aa  192  6e-48  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.92313 
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  45.38 
 
 
252 aa  189  4e-47  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_008541  Arth_0289  short-chain dehydrogenase/reductase SDR  43.46 
 
 
258 aa  182  4.0000000000000006e-45  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6514  short-chain dehydrogenase/reductase SDR  47.2 
 
 
250 aa  180  2e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  0.757683  normal  0.645684 
 
 
-
 
NC_011886  Achl_0516  short-chain dehydrogenase/reductase SDR  42.19 
 
 
263 aa  178  1e-43  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011879  Achl_3992  short-chain dehydrogenase/reductase SDR  41.37 
 
 
251 aa  177  2e-43  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.608737 
 
 
-
 
NC_013131  Caci_8408  short-chain dehydrogenase/reductase SDR  44.53 
 
 
254 aa  177  2e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.485174  normal 
 
 
-
 
NC_009380  Strop_0124  short-chain dehydrogenase/reductase SDR  43.3 
 
 
269 aa  175  8e-43  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0129  short-chain dehydrogenase/reductase SDR  42.86 
 
 
269 aa  174  1.9999999999999998e-42  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000288771 
 
 
-
 
NC_008578  Acel_2122  short-chain dehydrogenase/reductase SDR  43.51 
 
 
249 aa  171  2e-41  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.617745 
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  42.41 
 
 
259 aa  160  3e-38  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_6420  short-chain dehydrogenase/reductase SDR  47.11 
 
 
259 aa  159  4e-38  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_5163  short-chain dehydrogenase/reductase SDR  39.69 
 
 
258 aa  154  1e-36  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0380  short-chain dehydrogenase/reductase SDR  39.91 
 
 
265 aa  152  7e-36  Methylocella silvestris BL2  Bacteria  n/a    normal  0.453235 
 
 
-
 
NC_009656  PSPA7_5551  putative short-chain dehydrogenase  44.49 
 
 
265 aa  151  2e-35  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4040  Short-chain dehydrogenase/reductase SDR  41.59 
 
 
264 aa  150  3e-35  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.128419  normal  0.923094 
 
 
-
 
NC_007951  Bxe_A4474  putative short-chain dehydrogenase/reductase SDR  41.15 
 
 
270 aa  147  2.0000000000000003e-34  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.000662369 
 
 
-
 
NC_008463  PA14_63890  putative short-chain dehydrogenase  44.3 
 
 
265 aa  146  3e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  42.86 
 
 
258 aa  145  5e-34  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_009338  Mflv_0244  short-chain dehydrogenase/reductase SDR  41.5 
 
 
258 aa  146  5e-34  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0480  short-chain dehydrogenase/reductase SDR  41.27 
 
 
258 aa  144  2e-33  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0491  short-chain dehydrogenase/reductase SDR  41.27 
 
 
258 aa  144  2e-33  Mycobacterium sp. KMS  Bacteria  normal  normal  0.354983 
 
 
-
 
NC_009077  Mjls_0469  short-chain dehydrogenase/reductase SDR  41.27 
 
 
258 aa  143  3e-33  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  39.08 
 
 
266 aa  140  1.9999999999999998e-32  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3970  short-chain dehydrogenase/reductase SDR  40.27 
 
 
270 aa  140  3e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0129  short-chain dehydrogenase/reductase SDR  41.78 
 
 
271 aa  138  1e-31  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009439  Pmen_1100  short-chain dehydrogenase/reductase SDR  41.85 
 
 
264 aa  137  2e-31  Pseudomonas mendocina ymp  Bacteria  normal  0.576998  normal  0.0165353 
 
 
-
 
NC_013421  Pecwa_2365  short-chain dehydrogenase/reductase SDR  38.77 
 
 
257 aa  137  2e-31  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  37.55 
 
 
266 aa  137  3.0000000000000003e-31  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  41.15 
 
 
266 aa  134  9.999999999999999e-31  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
NC_010552  BamMC406_4199  short-chain dehydrogenase/reductase SDR  41.15 
 
 
266 aa  134  3e-30  Burkholderia ambifaria MC40-6  Bacteria  normal  0.308915  normal  0.0922746 
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  40.71 
 
 
266 aa  133  3.9999999999999996e-30  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_008726  Mvan_0661  short-chain dehydrogenase/reductase SDR  40.71 
 
 
258 aa  133  3.9999999999999996e-30  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.381329 
 
 
-
 
NC_010322  PputGB1_3070  short-chain dehydrogenase/reductase SDR  40.97 
 
 
265 aa  131  1.0000000000000001e-29  Pseudomonas putida GB-1  Bacteria  normal  0.0355963  normal 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  40.71 
 
 
264 aa  130  3e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  39.82 
 
 
266 aa  129  5.0000000000000004e-29  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  39.38 
 
 
281 aa  129  7.000000000000001e-29  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  39.38 
 
 
281 aa  129  7.000000000000001e-29  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_007492  Pfl01_2716  Short-chain dehydrogenase/reductase SDR  39.65 
 
 
265 aa  129  8.000000000000001e-29  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.490599 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  39.47 
 
 
262 aa  128  9.000000000000001e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_010086  Bmul_4300  short-chain dehydrogenase/reductase SDR  39.82 
 
 
266 aa  128  1.0000000000000001e-28  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.498015  normal 
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  41.41 
 
 
266 aa  127  2.0000000000000002e-28  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_01284  dehydrogenase  37.26 
 
 
266 aa  127  2.0000000000000002e-28  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3582  short-chain dehydrogenase/reductase SDR  37.61 
 
 
265 aa  127  3e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.15353 
 
 
-
 
NC_007492  Pfl01_2478  Short-chain dehydrogenase/reductase SDR  40.89 
 
 
262 aa  125  6e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0351  short-chain dehydrogenase/reductase SDR  38.24 
 
 
291 aa  125  9e-28  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  35.69 
 
 
262 aa  125  1e-27  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1035  short-chain dehydrogenase/reductase SDR  40.87 
 
 
270 aa  124  1e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0312813  n/a   
 
 
-
 
NC_010505  Mrad2831_1275  short-chain dehydrogenase/reductase SDR  42.22 
 
 
271 aa  124  2e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  38.6 
 
 
262 aa  124  2e-27  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_009621  Smed_5531  short-chain dehydrogenase/reductase SDR  36.36 
 
 
269 aa  123  4e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.356237  normal  0.14087 
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  38.33 
 
 
266 aa  123  4e-27  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_010623  Bphy_4200  short-chain dehydrogenase/reductase SDR  41.4 
 
 
271 aa  123  4e-27  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  38.67 
 
 
260 aa  121  9.999999999999999e-27  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1572  Short-chain dehydrogenase/reductase SDR  33.2 
 
 
263 aa  121  9.999999999999999e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.577459 
 
 
-
 
NC_009720  Xaut_1294  short-chain dehydrogenase/reductase SDR  43.33 
 
 
266 aa  120  1.9999999999999998e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5106  Short-chain dehydrogenase/reductase SDR  34.77 
 
 
262 aa  120  1.9999999999999998e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.311622  normal  0.753041 
 
 
-
 
NC_010511  M446_3566  short-chain dehydrogenase/reductase SDR  41.23 
 
 
269 aa  120  1.9999999999999998e-26  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.138362 
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  39.38 
 
 
263 aa  120  1.9999999999999998e-26  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_010338  Caul_3460  short-chain dehydrogenase/reductase SDR  39.21 
 
 
269 aa  120  1.9999999999999998e-26  Caulobacter sp. K31  Bacteria  normal  0.590645  normal 
 
 
-
 
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  37.89 
 
 
262 aa  119  3.9999999999999996e-26  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2216  short-chain dehydrogenase/reductase SDR  39.47 
 
 
266 aa  119  4.9999999999999996e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_3911  short-chain dehydrogenase/reductase SDR  32.93 
 
 
267 aa  119  6e-26  'Nostoc azollae' 0708  Bacteria  normal  0.322734  n/a   
 
 
-
 
NC_007005  Psyr_4572  Short-chain dehydrogenase/reductase SDR  35.04 
 
 
258 aa  118  9.999999999999999e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  38.14 
 
 
267 aa  118  9.999999999999999e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  37.44 
 
 
262 aa  118  9.999999999999999e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2448  short-chain dehydrogenase/reductase SDR  32.95 
 
 
257 aa  117  3e-25  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0138  short-chain dehydrogenase/reductase SDR  38.71 
 
 
273 aa  117  3e-25  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  36.56 
 
 
260 aa  116  3.9999999999999997e-25  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5779  short-chain dehydrogenase/reductase SDR  38.05 
 
 
268 aa  116  3.9999999999999997e-25  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00272439 
 
 
-
 
NC_010338  Caul_4770  short-chain dehydrogenase/reductase SDR  35.39 
 
 
266 aa  115  6e-25  Caulobacter sp. K31  Bacteria  normal  normal  0.228735 
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  40.1 
 
 
262 aa  115  6.9999999999999995e-25  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_010511  M446_2996  short-chain dehydrogenase/reductase SDR  40.83 
 
 
268 aa  115  7.999999999999999e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.056073 
 
 
-
 
NC_009664  Krad_2466  short-chain dehydrogenase/reductase SDR  40.98 
 
 
283 aa  115  8.999999999999998e-25  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8914  short-chain dehydrogenase/reductase SDR  36.54 
 
 
255 aa  114  1.0000000000000001e-24  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.505504 
 
 
-
 
NC_009436  Ent638_1512  short-chain dehydrogenase/reductase SDR  35.81 
 
 
264 aa  114  1.0000000000000001e-24  Enterobacter sp. 638  Bacteria  normal  normal  0.360234 
 
 
-
 
NC_012858  Rleg_6849  short-chain dehydrogenase/reductase SDR  34.13 
 
 
269 aa  115  1.0000000000000001e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.674583 
 
 
-
 
NC_014211  Ndas_5378  short-chain dehydrogenase/reductase SDR  35.36 
 
 
277 aa  114  2.0000000000000002e-24  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4718  short-chain dehydrogenase/reductase SDR  40.86 
 
 
270 aa  114  2.0000000000000002e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0082  short-chain dehydrogenase/reductase SDR  35.68 
 
 
269 aa  114  2.0000000000000002e-24  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2007  short-chain dehydrogenase/reductase SDR  40.09 
 
 
262 aa  114  2.0000000000000002e-24  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.511264  normal 
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  34.38 
 
 
262 aa  114  3e-24  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0197  short-chain dehydrogenase/reductase SDR  34.38 
 
 
262 aa  114  3e-24  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  34.25 
 
 
258 aa  113  4.0000000000000004e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  34.84 
 
 
267 aa  113  4.0000000000000004e-24  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  34.08 
 
 
271 aa  113  4.0000000000000004e-24  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_009512  Pput_2703  short-chain dehydrogenase/reductase SDR  37.33 
 
 
264 aa  113  5e-24  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_12531  short-chain type dehydrogenase/reductase  34.13 
 
 
268 aa  112  5e-24  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.00342881 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>