More than 300 homologs were found in PanDaTox collection
for query gene Plim_2867 on replicon NC_014148
Organism: Planctomyces limnophilus DSM 3776



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  100 
 
 
277 aa  541  1e-153  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_1625  binding-protein-dependent transport systems inner membrane component  37.65 
 
 
285 aa  174  1.9999999999999998e-42  Trichodesmium erythraeum IMS101  Bacteria  normal  0.0792607  normal  0.95709 
 
 
-
 
NC_012791  Vapar_4760  binding-protein-dependent transport systems inner membrane component  37.35 
 
 
267 aa  171  1e-41  Variovorax paradoxus S110  Bacteria  normal  0.318809  n/a   
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  38.71 
 
 
264 aa  170  3e-41  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  39.11 
 
 
264 aa  169  4e-41  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_007953  Bxe_C0801  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  34.75 
 
 
298 aa  164  2.0000000000000002e-39  Burkholderia xenovorans LB400  Bacteria  normal  0.0745387  normal 
 
 
-
 
NC_010725  Mpop_1095  binding-protein-dependent transport systems inner membrane component  39.11 
 
 
264 aa  163  3e-39  Methylobacterium populi BJ001  Bacteria  normal  0.0240883  normal  0.166534 
 
 
-
 
NC_002947  PP_3210  ABC transporter, permease protein  37.45 
 
 
267 aa  162  8.000000000000001e-39  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  37.13 
 
 
267 aa  160  2e-38  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_009485  BBta_1263  ABC transporter permease  35.02 
 
 
262 aa  158  8e-38  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.165267 
 
 
-
 
NC_013521  Sked_17280  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  39.29 
 
 
325 aa  156  4e-37  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.158115  normal  0.544115 
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  35.63 
 
 
268 aa  155  1e-36  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_007951  Bxe_A2015  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  36.78 
 
 
252 aa  154  2e-36  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3788  binding-protein-dependent transport systems inner membrane component  36.61 
 
 
317 aa  154  2e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0255815  normal 
 
 
-
 
NC_009668  Oant_3871  binding-protein-dependent transport systems inner membrane component  32.81 
 
 
280 aa  150  3e-35  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.208081  n/a   
 
 
-
 
NC_013441  Gbro_0259  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
453 aa  145  5e-34  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2281  binding-protein-dependent transport systems inner membrane component  36.84 
 
 
281 aa  144  1e-33  Frankia sp. EAN1pec  Bacteria  normal  0.695693  normal  0.331928 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  33.93 
 
 
257 aa  144  2e-33  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_009485  BBta_7480  ABC transporter permease  36.93 
 
 
271 aa  143  3e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.477102  normal  0.131238 
 
 
-
 
NC_011369  Rleg2_1676  binding-protein-dependent transport systems inner membrane component  35.63 
 
 
287 aa  143  3e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00381914  normal 
 
 
-
 
NC_009952  Dshi_1382  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
285 aa  143  3e-33  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.13305  normal 
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  34.82 
 
 
247 aa  141  9.999999999999999e-33  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_009921  Franean1_3891  binding-protein-dependent transport systems inner membrane component  37 
 
 
300 aa  139  3e-32  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.000896674  normal  0.103005 
 
 
-
 
NC_012848  Rleg_4665  binding-protein-dependent transport systems inner membrane component  34.88 
 
 
284 aa  139  4.999999999999999e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.65192 
 
 
-
 
NC_007406  Nwi_0333  binding-protein dependent transport system inner membrane protein  34.81 
 
 
278 aa  139  7e-32  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0469  binding-protein-dependent transport systems inner membrane component  34.54 
 
 
274 aa  137  1e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.858995  n/a   
 
 
-
 
NC_007802  Jann_1473  binding-protein-dependent transport systems inner membrane component  32.79 
 
 
283 aa  138  1e-31  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  32.59 
 
 
254 aa  137  2e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
246 aa  137  2e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007925  RPC_0572  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
276 aa  136  5e-31  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_3142  binding-protein-dependent transport systems inner membrane component  31.08 
 
 
264 aa  135  5e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.32312  normal  0.0411868 
 
 
-
 
NC_007778  RPB_0572  binding-protein-dependent transport systems inner membrane component  36.82 
 
 
274 aa  135  6.0000000000000005e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0627389  normal  0.343483 
 
 
-
 
NC_007964  Nham_0427  binding-protein-dependent transport systems inner membrane component  34.9 
 
 
279 aa  134  9.999999999999999e-31  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  33.6 
 
 
247 aa  134  1.9999999999999998e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3552  ABC transporter membrane spanning protein  32.83 
 
 
285 aa  132  7.999999999999999e-30  Agrobacterium vitis S4  Bacteria  normal  0.0625026  n/a   
 
 
-
 
NC_013440  Hoch_2033  binding-protein-dependent transport systems inner membrane component  36.46 
 
 
275 aa  131  1.0000000000000001e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0253714  normal  0.258175 
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  30.42 
 
 
283 aa  130  2.0000000000000002e-29  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  34.35 
 
 
253 aa  129  4.0000000000000003e-29  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  31.38 
 
 
257 aa  128  1.0000000000000001e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0258  binding-protein-dependent transport systems inner membrane component  34.8 
 
 
274 aa  128  1.0000000000000001e-28  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.750925 
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  33.85 
 
 
259 aa  127  2.0000000000000002e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_009484  Acry_0832  binding-protein-dependent transport systems inner membrane component  33.61 
 
 
254 aa  126  4.0000000000000003e-28  Acidiphilium cryptum JF-5  Bacteria  normal  0.404323  n/a   
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  32.4 
 
 
284 aa  125  7e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  29.37 
 
 
249 aa  124  2e-27  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  33.04 
 
 
274 aa  124  2e-27  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  31.7 
 
 
258 aa  124  2e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  33.81 
 
 
254 aa  121  9.999999999999999e-27  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  29.79 
 
 
281 aa  121  9.999999999999999e-27  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2372  binding-protein-dependent transport systems inner membrane component  30.59 
 
 
289 aa  120  1.9999999999999998e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.239724 
 
 
-
 
NC_008254  Meso_2046  binding-protein-dependent transport systems inner membrane component  32.24 
 
 
286 aa  120  1.9999999999999998e-26  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  31.73 
 
 
265 aa  120  3e-26  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
250 aa  119  3.9999999999999996e-26  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3562  binding-protein-dependent transport systems inner membrane component  40.17 
 
 
263 aa  119  4.9999999999999996e-26  Opitutus terrae PB90-1  Bacteria  normal  0.120198  normal  0.916816 
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  32.64 
 
 
258 aa  119  4.9999999999999996e-26  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  32.89 
 
 
261 aa  117  9.999999999999999e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  31.76 
 
 
270 aa  118  9.999999999999999e-26  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3506  binding-protein-dependent transport systems inner membrane component  28.33 
 
 
282 aa  118  9.999999999999999e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0528385  normal  0.0939424 
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  33.47 
 
 
279 aa  117  9.999999999999999e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_4887  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
267 aa  117  1.9999999999999998e-25  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  32.02 
 
 
253 aa  116  3.9999999999999997e-25  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_008044  TM1040_1494  binding-protein-dependent transport systems inner membrane component  32.67 
 
 
281 aa  116  3.9999999999999997e-25  Ruegeria sp. TM1040  Bacteria  normal  0.58323  normal 
 
 
-
 
NC_008686  Pden_0033  binding-protein-dependent transport systems inner membrane component  30.96 
 
 
243 aa  116  3.9999999999999997e-25  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  29.96 
 
 
268 aa  115  8.999999999999998e-25  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_011989  Avi_3460  ABC transporter membrane spanning protein  30.47 
 
 
288 aa  115  1.0000000000000001e-24  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3116  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
272 aa  115  1.0000000000000001e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.025765  normal 
 
 
-
 
NC_007802  Jann_2700  binding-protein-dependent transport systems inner membrane component  30.94 
 
 
316 aa  114  2.0000000000000002e-24  Jannaschia sp. CCS1  Bacteria  normal  0.505407  normal  0.565906 
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  29.96 
 
 
263 aa  114  2.0000000000000002e-24  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_009952  Dshi_0906  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
244 aa  114  2.0000000000000002e-24  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.53091  normal 
 
 
-
 
NC_008825  Mpe_A3414  ATP-binding protein of ABC transporter  32.73 
 
 
280 aa  114  2.0000000000000002e-24  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.24016 
 
 
-
 
NC_011666  Msil_1164  binding-protein-dependent transport systems inner membrane component  35.84 
 
 
260 aa  114  2.0000000000000002e-24  Methylocella silvestris BL2  Bacteria  n/a    normal  0.233018 
 
 
-
 
NC_009952  Dshi_2545  binding-protein-dependent transport system protein  30.28 
 
 
287 aa  113  3e-24  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.240068  normal  0.521676 
 
 
-
 
NC_008148  Rxyl_3036  binding-protein-dependent transport systems inner membrane component  29.46 
 
 
266 aa  112  4.0000000000000004e-24  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1308  binding-protein-dependent transport systems inner membrane component  34.38 
 
 
254 aa  112  5e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0000169849 
 
 
-
 
NC_009952  Dshi_1373  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
303 aa  112  5e-24  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.674946  normal  0.833857 
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  32.74 
 
 
258 aa  112  5e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_012791  Vapar_5134  binding-protein-dependent transport systems inner membrane component  32.02 
 
 
294 aa  112  6e-24  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3934  binding-protein-dependent transport systems inner membrane component  34.55 
 
 
278 aa  112  7.000000000000001e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.421742  normal 
 
 
-
 
NC_012791  Vapar_3961  binding-protein-dependent transport systems inner membrane component  28.94 
 
 
256 aa  112  8.000000000000001e-24  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  31.78 
 
 
258 aa  111  1.0000000000000001e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0344  binding-protein-dependent transport systems inner membrane component  29.75 
 
 
286 aa  111  1.0000000000000001e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.113814  n/a   
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
277 aa  111  2.0000000000000002e-23  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  27.35 
 
 
259 aa  110  2.0000000000000002e-23  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_008043  TM1040_3658  binding-protein-dependent transport systems inner membrane component  30.51 
 
 
245 aa  111  2.0000000000000002e-23  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3042  binding-protein-dependent transport systems inner membrane component  31.09 
 
 
375 aa  110  3e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  26.8 
 
 
260 aa  109  5e-23  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_008709  Ping_2376  ABC transporter substrate binding inner membrane protein  27.1 
 
 
265 aa  109  5e-23  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0644  ABC transporter, inner membrane subunit  34.62 
 
 
238 aa  108  6e-23  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_1260  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
252 aa  108  8.000000000000001e-23  Caulobacter sp. K31  Bacteria  normal  0.21476  normal  0.0147088 
 
 
-
 
NC_009049  Rsph17029_2297  binding-protein-dependent transport systems inner membrane component  34.62 
 
 
238 aa  108  8.000000000000001e-23  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0792355  normal  0.132671 
 
 
-
 
NC_010524  Lcho_1095  binding-protein-dependent transport systems inner membrane component  28.09 
 
 
255 aa  108  9.000000000000001e-23  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_004310  BR0211  ABC transporter, permease protein  31.17 
 
 
258 aa  108  1e-22  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0669  binding-protein-dependent transport systems inner membrane component  32.92 
 
 
272 aa  108  1e-22  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0848141 
 
 
-
 
NC_012852  Rleg_6281  binding-protein-dependent transport systems inner membrane component  32.89 
 
 
256 aa  107  1e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.783663  normal 
 
 
-
 
NC_011369  Rleg2_3645  binding-protein-dependent transport systems inner membrane component  34.52 
 
 
268 aa  108  1e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  26.21 
 
 
265 aa  107  3e-22  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_1668  binding-protein-dependent transport systems inner membrane component  33.06 
 
 
288 aa  106  3e-22  Nakamurella multipartita DSM 44233  Bacteria  normal  0.173855  normal  0.365472 
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  25.81 
 
 
257 aa  106  4e-22  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  25.81 
 
 
265 aa  106  4e-22  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  25.81 
 
 
257 aa  106  4e-22  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  25.81 
 
 
257 aa  106  4e-22  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
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