More than 300 homologs were found in PanDaTox collection
for query gene Mmwyl1_0940 on replicon NC_009654
Organism: Marinomonas sp. MWYL1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009654  Mmwyl1_0940  LysR family transcriptional regulator  100 
 
 
317 aa  659    Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1672  LysR family transcriptional regulator  37.97 
 
 
298 aa  253  4.0000000000000004e-66  Colwellia psychrerythraea 34H  Bacteria  normal  0.127951  n/a   
 
 
-
 
NC_010506  Swoo_0385  LysR family transcriptional regulator  35.71 
 
 
290 aa  186  5e-46  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0236  LysR family transcriptional regulator  36.24 
 
 
305 aa  181  2e-44  Shewanella loihica PV-4  Bacteria  normal  normal  0.859767 
 
 
-
 
NC_003910  CPS_0770  LysR family transcriptional regulator  36.52 
 
 
300 aa  179  8e-44  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3434  LysR family transcriptional regulator  32.48 
 
 
319 aa  140  3e-32  Serratia proteamaculans 568  Bacteria  normal  hitchhiker  0.000138004 
 
 
-
 
NC_007969  Pcryo_1327  LysR family transcriptional regulator  28.34 
 
 
311 aa  126  5e-28  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.893209 
 
 
-
 
NC_007005  Psyr_1558  regulatory protein, LysR:LysR, substrate-binding  33.21 
 
 
309 aa  126  6e-28  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.525706  hitchhiker  0.00043239 
 
 
-
 
NC_007204  Psyc_0050  LysR family transcriptional regulator  28.03 
 
 
311 aa  125  8.000000000000001e-28  Psychrobacter arcticus 273-4  Bacteria  normal  0.142799  normal 
 
 
-
 
NC_007953  Bxe_C0979  LysR family transcriptional regulator  32.82 
 
 
307 aa  124  1e-27  Burkholderia xenovorans LB400  Bacteria  normal  0.039685  normal 
 
 
-
 
NC_009997  Sbal195_0374  LysR family transcriptional regulator  30.72 
 
 
299 aa  125  1e-27  Shewanella baltica OS195  Bacteria  normal  normal  0.454239 
 
 
-
 
NC_011071  Smal_1967  transcriptional regulator, LysR family  30.94 
 
 
297 aa  124  2e-27  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0256766 
 
 
-
 
NC_011989  Avi_1223  transcriptional regulator LysR family  28.33 
 
 
304 aa  124  2e-27  Agrobacterium vitis S4  Bacteria  normal  0.894371  n/a   
 
 
-
 
NC_011663  Sbal223_0371  transcriptional regulator, LysR family  31.67 
 
 
298 aa  124  2e-27  Shewanella baltica OS223  Bacteria  normal  0.0434666  hitchhiker  0.0000318758 
 
 
-
 
NC_008700  Sama_3549  LyrR family transcriptional regulator  29.86 
 
 
299 aa  124  3e-27  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3240  LysR family transcriptional regulator  28.93 
 
 
305 aa  124  3e-27  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_3565  transcriptional regulator, LysR family  29.12 
 
 
298 aa  124  3e-27  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0028  LysR family transcriptional regulator  29.25 
 
 
299 aa  124  3e-27  Shewanella loihica PV-4  Bacteria  normal  0.391462  normal 
 
 
-
 
NC_003910  CPS_0831  LysR family transcriptional regulator  28.07 
 
 
296 aa  123  4e-27  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1818  LysR family transcriptional regulator  30.83 
 
 
297 aa  123  4e-27  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_5078  transcriptional regulator, LysR family  33.33 
 
 
306 aa  123  4e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0909939  hitchhiker  0.00473765 
 
 
-
 
NC_009654  Mmwyl1_3712  LysR family transcriptional regulator  27.63 
 
 
304 aa  123  5e-27  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.75932 
 
 
-
 
NC_008322  Shewmr7_0340  LysR family transcriptional regulator  29.75 
 
 
298 aa  123  5e-27  Shewanella sp. MR-7  Bacteria  normal  normal  0.366451 
 
 
-
 
NC_008577  Shewana3_3800  LysR family transcriptional regulator  29.39 
 
 
298 aa  123  5e-27  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.000185965  normal 
 
 
-
 
NC_009485  BBta_3064  LysR family transcriptional regulator  31.77 
 
 
329 aa  122  6e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.515173  normal 
 
 
-
 
NC_013440  Hoch_1650  transcriptional regulator, LysR family  32.31 
 
 
311 aa  122  7e-27  Haliangium ochraceum DSM 14365  Bacteria  normal  0.190227  normal 
 
 
-
 
NC_012854  Rleg_6471  transcriptional regulator, LysR family  29.13 
 
 
297 aa  122  9e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0361  LysR family transcriptional regulator  30.96 
 
 
298 aa  122  9e-27  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1123  LysR family transcriptional regulator  28.67 
 
 
303 aa  122  9.999999999999999e-27  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3062  LysR family transcriptional regulator  27.18 
 
 
300 aa  121  9.999999999999999e-27  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1113  LysR family transcriptional regulator  29.96 
 
 
318 aa  120  1.9999999999999998e-26  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.293194 
 
 
-
 
NC_009783  VIBHAR_01722  transcriptional regulator  29.02 
 
 
309 aa  121  1.9999999999999998e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009524  PsycPRwf_1033  LysR family transcriptional regulator  27.55 
 
 
298 aa  121  1.9999999999999998e-26  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_0522  transcriptional regulator, LysR family  30.29 
 
 
298 aa  120  3e-26  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0931  LysR family transcriptional regulator  31.36 
 
 
300 aa  120  3e-26  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3918  LysR family transcriptional regulator  28.47 
 
 
299 aa  120  3e-26  Enterobacter sp. 638  Bacteria  normal  0.228486  normal 
 
 
-
 
NC_011369  Rleg2_3098  transcriptional regulator, LysR family  30.74 
 
 
303 aa  120  3.9999999999999996e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.870472  normal  0.210962 
 
 
-
 
NC_009621  Smed_6327  LysR family transcriptional regulator  30.97 
 
 
291 aa  119  4.9999999999999996e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4317  LysR family transcriptional regulator  28.77 
 
 
296 aa  119  7e-26  Delftia acidovorans SPH-1  Bacteria  normal  0.135379  normal  0.740819 
 
 
-
 
NC_004347  SO_4524  LysR family transcriptional regulator  26.74 
 
 
325 aa  119  7e-26  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_0363  LysR family transcriptional regulator  30.6 
 
 
298 aa  119  7e-26  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B2223  LysR family transcriptional regulator  29.8 
 
 
310 aa  119  7e-26  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4060  LysR family transcriptional regulator  31.05 
 
 
298 aa  119  7.999999999999999e-26  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.000026158 
 
 
-
 
NC_010501  PputW619_1182  LysR family transcriptional regulator  26.67 
 
 
298 aa  119  9e-26  Pseudomonas putida W619  Bacteria  normal  0.815774  normal  0.250883 
 
 
-
 
NC_012912  Dd1591_2579  transcriptional regulator, LysR family  26.28 
 
 
311 aa  119  9e-26  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_3529  transcriptional regulator, substrate-binding of LysR family protein  28.89 
 
 
298 aa  118  9.999999999999999e-26  Psychromonas ingrahamii 37  Bacteria  normal  hitchhiker  0.00382378 
 
 
-
 
NC_007511  Bcep18194_B2931  LysR family transcriptional regulator  26.67 
 
 
352 aa  118  9.999999999999999e-26  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2286  LysR family transcriptional regulator  32.41 
 
 
303 aa  118  9.999999999999999e-26  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_001225  transcriptional regulator LysR family  27.27 
 
 
299 aa  118  9.999999999999999e-26  Vibrio sp. Ex25  Bacteria  normal  0.338504  n/a   
 
 
-
 
NC_011071  Smal_0915  transcriptional regulator, LysR family  29.43 
 
 
314 aa  119  9.999999999999999e-26  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4248  LysR family transcriptional regulator  27.72 
 
 
298 aa  117  1.9999999999999998e-25  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_0111  LysR family transcriptional regulator  33.85 
 
 
320 aa  117  1.9999999999999998e-25  Shewanella putrefaciens CN-32  Bacteria  normal  0.248059  n/a   
 
 
-
 
NC_011891  A2cp1_0988  transcriptional regulator, LysR family  31.01 
 
 
300 aa  117  1.9999999999999998e-25  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.882538  n/a   
 
 
-
 
NC_009456  VC0395_0257  LysR family transcriptional regulator  28.28 
 
 
299 aa  117  1.9999999999999998e-25  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3607  LysR family transcriptional regulator  29.14 
 
 
296 aa  117  1.9999999999999998e-25  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4638  transcriptional regulator  31.1 
 
 
314 aa  117  1.9999999999999998e-25  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_52930  transcriptional regulator  31.23 
 
 
314 aa  117  1.9999999999999998e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.30988  normal 
 
 
-
 
NC_010498  EcSMS35_0328  LysR family transcriptional regulator  32.36 
 
 
297 aa  117  3e-25  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.312105 
 
 
-
 
NC_012560  Avin_35890  Regulatory protein, LysR family  30.74 
 
 
309 aa  117  3e-25  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0369  LysR family transcriptional regulator  28.67 
 
 
295 aa  117  3e-25  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I0747  HTH-type transcriptional regulator, LysR-family  31.64 
 
 
290 aa  117  3e-25  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.796071  n/a   
 
 
-
 
NC_012850  Rleg_3355  transcriptional regulator, LysR family  30 
 
 
303 aa  117  3e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.35672  normal  0.0333388 
 
 
-
 
NC_011145  AnaeK_0991  transcriptional regulator, LysR family  31.01 
 
 
300 aa  117  3e-25  Anaeromyxobacter sp. K  Bacteria  hitchhiker  0.00933399  n/a   
 
 
-
 
NC_002947  PP_1164  LysR family transcriptional regulator  27.72 
 
 
298 aa  116  3.9999999999999997e-25  Pseudomonas putida KT2440  Bacteria  normal  0.376229  normal  0.0112805 
 
 
-
 
NC_009512  Pput_1198  LysR family transcriptional regulator  27.72 
 
 
298 aa  116  3.9999999999999997e-25  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0448  LysR family transcriptional regulator  27.62 
 
 
306 aa  116  3.9999999999999997e-25  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1169  LysR family transcriptional regulator  30.65 
 
 
298 aa  117  3.9999999999999997e-25  Pseudomonas putida GB-1  Bacteria  normal  normal  0.695965 
 
 
-
 
NC_010506  Swoo_3932  LysR family transcriptional regulator  25.87 
 
 
298 aa  117  3.9999999999999997e-25  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4263  LysR family transcriptional regulator  27.72 
 
 
305 aa  117  3.9999999999999997e-25  Pseudomonas putida GB-1  Bacteria  normal  0.467843  normal 
 
 
-
 
NC_012880  Dd703_0459  transcriptional regulator, LysR family  27.47 
 
 
297 aa  116  5e-25  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1124  LysR family transcriptional regulator  30.28 
 
 
298 aa  116  5e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.960499  normal 
 
 
-
 
NC_010002  Daci_3033  LysR family transcriptional regulator  30.98 
 
 
305 aa  116  5e-25  Delftia acidovorans SPH-1  Bacteria  normal  0.0273235  normal  0.89504 
 
 
-
 
NC_009656  PSPA7_4241  transcriptional regulator  30.53 
 
 
303 aa  116  6e-25  Pseudomonas aeruginosa PA7  Bacteria  normal  0.607161  n/a   
 
 
-
 
NC_007005  Psyr_1366  regulatory protein, LysR:LysR, substrate-binding  30.24 
 
 
298 aa  116  6e-25  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4971  LysR family transcriptional regulator  26.77 
 
 
328 aa  116  6e-25  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0570046  n/a   
 
 
-
 
NC_010515  Bcenmc03_4290  LysR family transcriptional regulator  26.77 
 
 
328 aa  116  6e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.376477 
 
 
-
 
NC_008543  Bcen2424_3189  LysR family transcriptional regulator  26.77 
 
 
328 aa  116  6e-25  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3498  LysR family transcriptional regulator  27.92 
 
 
298 aa  115  6.9999999999999995e-25  Marinomonas sp. MWYL1  Bacteria  decreased coverage  0.00180927  normal 
 
 
-
 
NC_010581  Bind_2818  LysR family transcriptional regulator  26.9 
 
 
316 aa  115  6.9999999999999995e-25  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2944  putative transcriptional regulator  29.48 
 
 
297 aa  115  7.999999999999999e-25  Pseudomonas aeruginosa PA7  Bacteria  normal  0.625117  n/a   
 
 
-
 
NC_007406  Nwi_0488  LysR family transcriptional regulator  27.15 
 
 
309 aa  115  7.999999999999999e-25  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_2905  LysR family transcriptional regulator  31.66 
 
 
303 aa  115  7.999999999999999e-25  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.782139  n/a   
 
 
-
 
NC_009708  YpsIP31758_2818  LysR family substrate binding transcriptional regulator  31.66 
 
 
303 aa  115  7.999999999999999e-25  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.987922  n/a   
 
 
-
 
NC_013421  Pecwa_3751  transcriptional regulator, LysR family  30.77 
 
 
298 aa  115  7.999999999999999e-25  Pectobacterium wasabiae WPP163  Bacteria  normal  0.587681  n/a   
 
 
-
 
NC_007005  Psyr_3062  regulatory protein, LysR:LysR, substrate-binding  28.46 
 
 
298 aa  115  8.999999999999998e-25  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4096  transcriptional regulator, LysR family  30.86 
 
 
308 aa  115  8.999999999999998e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_34690  LysR family transcriptional regulator  29.48 
 
 
297 aa  115  8.999999999999998e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0262778  normal  0.106193 
 
 
-
 
NC_011894  Mnod_6154  transcriptional regulator, LysR family  31.9 
 
 
297 aa  115  1.0000000000000001e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4691  LysR family substrate binding transcriptional regulator  26.26 
 
 
300 aa  115  1.0000000000000001e-24  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_1672  LysR family transcriptional regulator  29.43 
 
 
288 aa  115  1.0000000000000001e-24  Psychrobacter arcticus 273-4  Bacteria  normal  0.255647  normal 
 
 
-
 
NC_009784  VIBHAR_06921  transcriptional regulator  31.32 
 
 
289 aa  115  1.0000000000000001e-24  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_2368  LysR family transcriptional regulator  26.96 
 
 
313 aa  115  1.0000000000000001e-24  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.048116 
 
 
-
 
NC_009832  Spro_0670  LysR family transcriptional regulator  30.11 
 
 
303 aa  114  1.0000000000000001e-24  Serratia proteamaculans 568  Bacteria  normal  0.87688  normal 
 
 
-
 
NC_009675  Anae109_3640  LysR family transcriptional regulator  30.56 
 
 
298 aa  115  1.0000000000000001e-24  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.101202 
 
 
-
 
NC_009074  BURPS668_1430  LysR family transcriptional regulator  26.3 
 
 
299 aa  115  1.0000000000000001e-24  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4895  LysR family transcriptional regulator  31.6 
 
 
297 aa  115  1.0000000000000001e-24  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0083  LysR family transcriptional regulator  25.76 
 
 
300 aa  115  1.0000000000000001e-24  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.670509  normal  0.78955 
 
 
-
 
NC_012850  Rleg_3690  transcriptional regulator, LysR family  26.96 
 
 
297 aa  115  1.0000000000000001e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.316859  normal 
 
 
-
 
NC_008577  Shewana3_3930  LysR family transcriptional regulator  26.39 
 
 
320 aa  114  1.0000000000000001e-24  Shewanella sp. ANA-3  Bacteria  normal  0.0309903  normal  0.96448 
 
 
-
 
NC_009512  Pput_4162  LysR family transcriptional regulator  30.24 
 
 
298 aa  115  1.0000000000000001e-24  Pseudomonas putida F1  Bacteria  normal  0.265512  normal  0.711373 
 
 
-
 
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