| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1198 |
|---|
| Symbol | |
|---|
| ID | 5191150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1357346 |
|---|
| End bp | 1358242 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640585661 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001266543 |
|---|
| Protein GI | 148546441 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCAGA TCCACCTGAT GAAGGTATTC GTCGCCGTCG GCGAGCTGGA AAGCTTCGCC
GCGGCTGCCC GCCGTCTGGA CATTTCTGCG GCCGCCGTCA CCCGCGCCGT CAGCGCCCTG
GAAGAGCAGC TCGGGGTCAA ACTGTTGCTG CGCACAACAC GCAGCGTGCG TCTGACCGAG
GCCGGCGGCC GCTATCTGGA AGACACCCGG CACATCCTCG CCAGTATTCA CGAGGCCAAT
GAAGCCGCTG CCGGCATCAA TGCGACGCCC AGGGGCGACC TGGCGGTGAC CGCGCCGATT
TTGTTCGGCA AGAAGTTCGT CATGCCGTGC ATTGTCCGTT ACCTGCAGCA GTACCCGGAA
GTCGACGTTT CCGCGTTTTT TCTCGACCGC GTGGTGAACA TGGTCGAGGA GGGCATGGAC
GTGGCCGTGC GCATCGGGCC GTTGCCCGAC TCCGGGTTGA AGGCGTTGCG GGTGGGCAGG
GTGCGGCGCA TGTTGTGTGC CTCACCCGAC TACCTGGCGC GCCATGGTGT GCCGAAGCAC
CCGTCGGACC TGGCCGGGCA TGCGATAATC GGCACCACCA ACCTGTCGCC GCGGGCGGGT
TGGCGCTTCG GAGTGACCGA CGAGCCGACC TTGGTGCGCA TGAAGCCACG GCTGACGGTA
ACCAGCAATG ACGGGGCAAT CGCAGCTGCC AGCGGCGGGC TGGGGATTGC CCGGCTGCTG
TCGTACCAGG TGGCAGACGA ACTGGCCAGC GGGCAGTTAC AGGTGCTGCT GGCCGAGTAC
GAAGAGGCGC CCTGGCCCAT TCATGTGCTG CACCGCGAAA GCAAGTACGG CTCGGCCAAG
GTCAGGGCCT TTATCGACAT GCTGGCGCAA GACTTGCGCG ATCAGCAGCT GGATTGA
|
|---|
| Protein sequence | MDQIHLMKVF VAVGELESFA AAARRLDISA AAVTRAVSAL EEQLGVKLLL RTTRSVRLTE
AGGRYLEDTR HILASIHEAN EAAAGINATP RGDLAVTAPI LFGKKFVMPC IVRYLQQYPE
VDVSAFFLDR VVNMVEEGMD VAVRIGPLPD SGLKALRVGR VRRMLCASPD YLARHGVPKH
PSDLAGHAII GTTNLSPRAG WRFGVTDEPT LVRMKPRLTV TSNDGAIAAA SGGLGIARLL
SYQVADELAS GQLQVLLAEY EEAPWPIHVL HRESKYGSAK VRAFIDMLAQ DLRDQQLD
|
|---|
| |