| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3549 |
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| Symbol | |
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| ID | 4605796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 4181280 |
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| End bp | 4182179 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639782970 |
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| Product | LyrR family transcriptional regulator |
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| Protein accession | YP_929421 |
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| Protein GI | 119776681 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCTT CACAATTGTA CCGCATGCTG GTGTTTGCTT CGGTTGTAGA GCAAGGGTCA
CTGACCATGG CCGCAGAAGT GTTGGGGATC AGCCGCTCCA TGGTGAGCCA GCACCTGAAA
AAGCTGGAAG AGCGGTTGGG CTGCGAGCTG CTTCACCGCA CCACGAGGCG TATCAGCCTG
ACCGAAGATG GGCGGGAGTT TTTTCATTAC TGCGGCGAAC TATTGCAGCT GGCAAGGCAG
GCAGAGGCTG TGACCCGCCC GGCGGATGAG CATCTTCACG GTAGCCTCAG GGTCACGGCG
CCGGTTGGTC TGGGAGAACA TAACCTGCTG CCCCTTATCG GCGACTTTCA TCGCCGTTAC
CCCAACATTC GTCTGACATT GATGCTGGAG GACAGCAAGC TCAACCTCCT CGAACATCAA
ATTGACGTGG CCATACAGGC AGGTTGGCCG GAAGATTCAG AATTCAGGGC CATTAAGCTT
GGCAGTTTTG ATGAGCAGTT GGTGGCCAGC CCCGAGTATG TGGCGGCTCA TGGAAAGCCC
TTGCACCCCG ACAACTTACA GCATCATCAA TGGTTGGCGC ATGCGTCCGG CCATTTGCCG
AAAACCTGGA CGTTGCACAA TGGTCAGGGT GAGGAGTTTC GGGTCAGGAT CACTCCATTT
ATCAGCTGCA ACAGTACCAA TGGCCTGATT GCCATGGCGC TGCAGGGGCT GGGGGTGGCA
ATACTGCCCG ATAATCTGGT GAACGAGCAT TTGGCGTCCG GGGCCTTGGA ACTGCTTTTG
CCGGATTATC ATTTACGCGA AGGCGGCGTG TATGCCCTGC ATCCCTATAA AGAGAATACT
CCCCCCAGAG TGCGGGTATT TCTCGACTTT CTGAAGGAGC GGTTGATCCA ATCCCGCTAA
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| Protein sequence | MDASQLYRML VFASVVEQGS LTMAAEVLGI SRSMVSQHLK KLEERLGCEL LHRTTRRISL
TEDGREFFHY CGELLQLARQ AEAVTRPADE HLHGSLRVTA PVGLGEHNLL PLIGDFHRRY
PNIRLTLMLE DSKLNLLEHQ IDVAIQAGWP EDSEFRAIKL GSFDEQLVAS PEYVAAHGKP
LHPDNLQHHQ WLAHASGHLP KTWTLHNGQG EEFRVRITPF ISCNSTNGLI AMALQGLGVA
ILPDNLVNEH LASGALELLL PDYHLREGGV YALHPYKENT PPRVRVFLDF LKERLIQSR
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