| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1223 |
|---|
| Symbol | |
|---|
| ID | 7387613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1037535 |
|---|
| End bp | 1038449 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643650674 |
|---|
| Product | transcriptional regulator LysR family |
|---|
| Protein accession | YP_002548880 |
|---|
| Protein GI | 222147923 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.894371 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACACTG TTAATTACAC ACACCATCTT TCCACTTTTG TTGATGTCGT GCGCGCAGGT
TCATTTTCGG CGGTGGCAAG ACGTCAAGGC ATGAAGCCTT CTTCTATTGC CCGTAAGATT
GACATGCTTG AGGACTATTT TGGTGCCGCA CTTTTTGTGC GGTCCACACG GGCGCTGATG
CTGACAGATG TTGGCGAAGT GCTGGTGGCG CGGGCAGAGG TTATTCTCAA CGAGCTGAAC
GCCATGCGCG TCGAGATCAA ATCCATCAAG GACAATCTTG ATGGGCCGCT TCGTATCAGT
TGCCTTCCCA CATTTGGCAA GCTGCATATT TTGCCTTGGT TGCCAAAACT GCGTGAGAAT
TTTCCCCGCA TGACGGTGGA GCTGGATTTG ACCGAGAGGA TTGCCAATCC GTCGATTGAA
CGGCTTGATG CCGTTTTGCG CATTGGTCCT TTGAACGACA GCGGGCTTTA TGCAAAGACC
ATTGGCGTTC AGCGTTGGCT TGTGTGCGCA AGCCCCGCCT ATGTTGGCCG CTCTGGAAAA
CCAGCAGGCT GGAGCCAGCT TGCTGGGCAT GCAATTGTTG ATAAATTGCA TGATCCGGCT
GGAATTTGCT GGCATGGAGC GCTTGATCCG CAGCAGTATT CGGCCATGTC CATAGGCTTT
CGCTGCAATG ATTTTGATGG GTTGCGACAG GCAGCGCTTG GTGGGCTAGG CTTGGCTTAT
CTGCCGGATT GGGTGGCGTT GCCAGATATC ACGGCGGGGA GGCTGGTGAA GCTTTTCGAC
GATAGCAAAC GCGGTGACGA GCCTATCTCT CTGTTGCGGG CGTCTTCCAA GCCTTCGGCC
AGACTCCAGA TTTTTCATGA CGCGCTCCTT GATCACTTGC GCAAATTTTC TGAAACTGGG
TATGGCGTAG AGTGA
|
|---|
| Protein sequence | MDTVNYTHHL STFVDVVRAG SFSAVARRQG MKPSSIARKI DMLEDYFGAA LFVRSTRALM
LTDVGEVLVA RAEVILNELN AMRVEIKSIK DNLDGPLRIS CLPTFGKLHI LPWLPKLREN
FPRMTVELDL TERIANPSIE RLDAVLRIGP LNDSGLYAKT IGVQRWLVCA SPAYVGRSGK
PAGWSQLAGH AIVDKLHDPA GICWHGALDP QQYSAMSIGF RCNDFDGLRQ AALGGLGLAY
LPDWVALPDI TAGRLVKLFD DSKRGDEPIS LLRASSKPSA RLQIFHDALL DHLRKFSETG
YGVE
|
|---|
| |