| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0028 |
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| Symbol | |
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| ID | 4920540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 30110 |
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| End bp | 31009 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161540 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001092160 |
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| Protein GI | 127510963 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.391462 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCAT CACAACTCTA TCGTATGTTG GTCTTTGCCA GTGTGGTCGA GCATGGCTCC
TTGACCCGCG CCGCCGAGTC GCTAAACATT AGCCGCTCCA TGGTGAGTCA ACACCTAAAG
AAACTGGAGC ATAGATGCCA GTCGCGTCTA TTAAACAGGA CCACCCGCAG CCTGTCGCTC
ACCCAGGAGG GTCAGTCCTT TTACCGCTAC TGCGCCGAGC TGCTCAAACT CGCCAAGCAG
GCGGAAACCT CGCTGCAGCC AGCAGATGCC GAGCTGCAAG GCAGCATCAC CCTCGCCGTC
CCCCAGGCGC TAGGCGATGG AGAGATAGCC CCCATCATCA AGACATTTCA CCAGCATTAT
CCCAAGGTGC ATCTCTCCCT ACTGATTCAG GACAGACAGC TGGACCTCAC CGAGCATCAG
ATAGATGTAG CGATTCAGAT AGGGGCCGCC AGTCAGCCCA GCGTCAATGA GACCAGACTG
GGTCGCTTCG ATGAATATCT GGTGGCTAGC CCCGACTATG TTGCGCACCA TGGCGCGCCT
GTGCACCCGG ACAATCTCAG CCATCATCAT TGGATAGGCC TGGCGGGCGA CAGGCTCCCC
AGACATTGGC AGTTTGAAAA CAGCGAAGGC GAGCGTGTCC GCCTGCAGCT TAGCCCTTTC
ATCAACTGCA ACAGCCTACA GGGAACCCTA AGCCTGGCGA TGCAGGGGCT GGGCGTTGCC
TTGCTGCCCT CCCCCTTGAT AAGCCAGCAC CTTGCCAATG GGCAGCTGGT ACAGCTACTG
CCAGACTATC ATCTGGGACG AGGCGCCCTC TACCTGGTAC ATCCCTATCT TGAGGTGATT
CCGCCAAGAG TCAGGGCACT TATCGAACTG CTGACCGAGC GACTCACACC GGCGGCATAA
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| Protein sequence | MDASQLYRML VFASVVEHGS LTRAAESLNI SRSMVSQHLK KLEHRCQSRL LNRTTRSLSL
TQEGQSFYRY CAELLKLAKQ AETSLQPADA ELQGSITLAV PQALGDGEIA PIIKTFHQHY
PKVHLSLLIQ DRQLDLTEHQ IDVAIQIGAA SQPSVNETRL GRFDEYLVAS PDYVAHHGAP
VHPDNLSHHH WIGLAGDRLP RHWQFENSEG ERVRLQLSPF INCNSLQGTL SLAMQGLGVA
LLPSPLISQH LANGQLVQLL PDYHLGRGAL YLVHPYLEVI PPRVRALIEL LTERLTPAA
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