| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_3751 |
|---|
| Symbol | |
|---|
| ID | 8532177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 4140523 |
|---|
| End bp | 4141419 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_003261093 |
|---|
| Protein GI | 261822987 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.587681 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGCC TGAATGGCTT TGTGGTGTTT GTGCAGGTAG CCGAAACGCG TAGTTTCGTT
GCTGCGGGTC GATTACTGGG CGTGTCAGCA TCTGCGGTAG GTAAAAGTGT CGCACGGCTC
GAAGAAAAAC TCGGAGTGAG GCTGTTTCAT CGCAGTACAC GCAGCATCAC ACTGACGGCT
GAAGGCTCAC TGTTTCTGGC GCGTAGCCGA CGTATCCTGG CCGAAATCGA GGCGGCAGAG
TTGGAACTGT CGCAAACCAA TGCCGTACCG CGCGGACGCC TGCGGGTAAG CCTGCCATTG
GTTAGCTCAC TGGTGCTCCC CGTACTCGGC GAGTTCATGC GCGAGTACCC CGAAATCGAA
TTGGATCTGG ACTTCACCGA TCGAATGGTC GATGTCATTG AAGAAGGGTT CGATGCCGTG
GTGCGGACAG GCAACCCCGT TGACTCACGA CTCACTGCTC GCAGACTGGG CACCTTCGGT
TTTCTGCTGG TGGCATCGCC AGACTACCTT GCTCGGCACG GAACGCCCAA GACACCTGCC
GACCTGATGC AGCACGCCTG TCTGCACTAT CGCTTTCCTA ATAGCGGCAA GCTGGAGCCC
TGGGCGCTGC GGCTTGCTCC CAACGGACCA GAGTTGCCAT TGCCCACATC GATGATCTGC
AACAACATTG AAACGCGCGT CTGTTTTGCA CTACAAGGGC TGGGCATTGC CTACCTGCCG
GATTTCTCTA TCCGCGAACT GCTGGCCAAG GGGTTGCTAC AGCCGATCCT GAACGACTAT
GTGGAACGCA GTGGCGTCCT ACATGTATTG TGGCCCGCGA GCAAACACCC ATCGCCAAAA
GTGCGAGCAC TGGTGGATTT CCTCTGTGCG CGGGTGTTTC CCTCATCTAA CGGGTAA
|
|---|
| Protein sequence | MDSLNGFVVF VQVAETRSFV AAGRLLGVSA SAVGKSVARL EEKLGVRLFH RSTRSITLTA
EGSLFLARSR RILAEIEAAE LELSQTNAVP RGRLRVSLPL VSSLVLPVLG EFMREYPEIE
LDLDFTDRMV DVIEEGFDAV VRTGNPVDSR LTARRLGTFG FLLVASPDYL ARHGTPKTPA
DLMQHACLHY RFPNSGKLEP WALRLAPNGP ELPLPTSMIC NNIETRVCFA LQGLGIAYLP
DFSIRELLAK GLLQPILNDY VERSGVLHVL WPASKHPSPK VRALVDFLCA RVFPSSNG
|
|---|
| |