Gene Shewana3_3800 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_3800 
Symbol 
ID4480010 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp4564982 
End bp4565878 
Gene Length897 bp 
Protein Length298 aa 
Translation table11 
GC content48% 
IMG OID639728413 
ProductLysR family transcriptional regulator 
Protein accessionYP_871424 
Protein GI117922232 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000185965 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACATT TCTCCGCCCT GCCCATTTTC GTCACTGTGG TGGAATGCGG TAGCTTTTCC 
GCTGCGGGAC AAAAACTCGG GCTGAGTAAA TCAGCCATCA GCAAACGAAT CACACAGTTG
GAGCAACACT TAGGGATTCA ACTGTTACAA CGCACCACTC GCAGTTTGAG CCTAACGGAT
GCTGGCGCGC GCTATTTCGA ATATATTCGC CCCGCTGTGC AGCTCACCCA AGAAGGATTA
GATGCCATCT CCGAATTGCA GCAAACACCT AAAGGCAATC TGCGAATTTC CGTGCCTATG
GTGTTTGGCC GCTTGTATAT TGCACCTTTA ATCGCTGAGT TTTTAAAACG TTACCCCGAT
ATTCAGCTGC AAATGCAAAT GGATGATAAG ACCACGGATT TAATCGCAGG CGGCTTCGAT
TTAGCCATTC GCATCGGCGA ACTGCCCGAC TCCAGCCTTA TCGCCCGCAA AATTGCCCCT
TGTTTGAGCG TGATTTGCGC ATCCCCCGCA TATCTAGCGC AGCACGGTTC ACCCATGACT
CCTAGCGGGT TAACTCAGCA CAACTGTTTG TTTTACAGTT ACTTTCAAGA TGGTGTGGAA
TGGAGTTTCC ACAGTCCCTA TGGCGTGCAA CGTGTTCAAC CCAAAGGCAA TTATCAGGTG
AATAATAGCG ATGCTATCCA CCAAGCCTGT CTTGATGGCC TTGGTATCGC CAATCTGCCA
CGCTTTATCG TAGAGTCCGA CCTACAGGCT GGGCGTTTAC AAACGATACT GACTGACTTT
CCACTCCCCG AACATGGTAT TTATGCTGTG TATCCACAGC GAAAATACCT CCCAACCAAA
GTGACGGTAT TGATTGGTTT TTTGATGGAG AAATTGGCGA GTGGCAAGTT TGTATAA
 
Protein sequence
MEHFSALPIF VTVVECGSFS AAGQKLGLSK SAISKRITQL EQHLGIQLLQ RTTRSLSLTD 
AGARYFEYIR PAVQLTQEGL DAISELQQTP KGNLRISVPM VFGRLYIAPL IAEFLKRYPD
IQLQMQMDDK TTDLIAGGFD LAIRIGELPD SSLIARKIAP CLSVICASPA YLAQHGSPMT
PSGLTQHNCL FYSYFQDGVE WSFHSPYGVQ RVQPKGNYQV NNSDAIHQAC LDGLGIANLP
RFIVESDLQA GRLQTILTDF PLPEHGIYAV YPQRKYLPTK VTVLIGFLME KLASGKFV