More than 300 homologs were found in PanDaTox collection
for query gene Amir_5850 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_5850  transcriptional regulator, Crp/Fnr family  100 
 
 
223 aa  434  1e-121  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0120826  n/a   
 
 
-
 
NC_013093  Amir_6844  transcriptional regulator, Crp/Fnr family  67.12 
 
 
235 aa  289  2e-77  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0901192  n/a   
 
 
-
 
NC_013093  Amir_5851  transcriptional regulator, Crp/Fnr family  65.16 
 
 
242 aa  277  8e-74  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0930905  n/a   
 
 
-
 
NC_009953  Sare_0070  cyclic nucleotide-binding protein  41.44 
 
 
227 aa  157  2e-37  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.376283 
 
 
-
 
NC_013131  Caci_7216  transcriptional regulator, Crp/Fnr family  41.36 
 
 
246 aa  145  4.0000000000000006e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.726682  normal 
 
 
-
 
NC_009921  Franean1_5506  Crp/FNR family transcriptional regulator  41.07 
 
 
246 aa  140  1.9999999999999998e-32  Frankia sp. EAN1pec  Bacteria  normal  0.324567  normal  0.438631 
 
 
-
 
NC_013947  Snas_1232  transcriptional regulator, Crp/Fnr family  34.39 
 
 
235 aa  131  6.999999999999999e-30  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6885  putative transcriptional regulator, Crp/Fnr family  37.61 
 
 
240 aa  124  1e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1608  putative transcriptional regulator, Crp/Fnr family  36.36 
 
 
248 aa  108  6e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5511  transcriptional regulator, Crp/Fnr family  34.78 
 
 
227 aa  106  3e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  0.360617  n/a   
 
 
-
 
NC_013947  Snas_4977  transcriptional regulator, Crp/Fnr family  32.52 
 
 
234 aa  100  3e-20  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.111601 
 
 
-
 
NC_009921  Franean1_1677  cyclic nucleotide-binding protein  32.13 
 
 
258 aa  97.8  1e-19  Frankia sp. EAN1pec  Bacteria  normal  0.506462  normal  0.511537 
 
 
-
 
NC_013093  Amir_5783  transcriptional regulator, Crp/Fnr family  37.86 
 
 
212 aa  94.4  1e-18  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00268451  n/a   
 
 
-
 
NC_013739  Cwoe_0602  transcriptional regulator, Crp/Fnr family  33.98 
 
 
225 aa  94.4  1e-18  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.628877 
 
 
-
 
NC_013510  Tcur_1167  transcriptional regulator, Crp/Fnr family  34.1 
 
 
231 aa  92.4  4e-18  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0781257  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  28.36 
 
 
225 aa  88.6  7e-17  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8981  putative transcriptional regulator, Crp/Fnr family  37.64 
 
 
222 aa  85.1  8e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  29.07 
 
 
228 aa  83.2  0.000000000000003  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  31.46 
 
 
225 aa  82.8  0.000000000000004  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  28.41 
 
 
226 aa  81.3  0.00000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_008148  Rxyl_2076  Crp/FNR family transcriptional regulator  31.33 
 
 
234 aa  80.5  0.00000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.398696  n/a   
 
 
-
 
NC_013510  Tcur_1118  transcriptional regulator, Crp/Fnr family  30.38 
 
 
240 aa  80.5  0.00000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  31.85 
 
 
225 aa  80.1  0.00000000000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  32.45 
 
 
228 aa  79  0.00000000000005  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  30.26 
 
 
228 aa  78.6  0.00000000000007  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  31.21 
 
 
225 aa  78.2  0.00000000000009  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  28.41 
 
 
226 aa  78.2  0.0000000000001  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_007794  Saro_2016  Crp/FNR family transcriptional regulator  29.49 
 
 
229 aa  77.4  0.0000000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0776172  n/a   
 
 
-
 
NC_009953  Sare_1644  Crp/FNR family transcriptional regulator  34.83 
 
 
223 aa  76.3  0.0000000000003  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2257  transcriptional regulator, Crp/Fnr family  31.6 
 
 
234 aa  75.9  0.0000000000005  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00000784359  n/a   
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  32.69 
 
 
224 aa  75.1  0.0000000000008  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  32.02 
 
 
224 aa  75.1  0.0000000000008  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_009380  Strop_1659  cyclic nucleotide-binding  34.83 
 
 
223 aa  74.7  0.0000000000009  Salinispora tropica CNB-440  Bacteria  normal  0.834954  normal 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  29.94 
 
 
225 aa  74.7  0.000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  32.02 
 
 
224 aa  74.7  0.000000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  31.91 
 
 
224 aa  74.3  0.000000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  31.38 
 
 
224 aa  74.3  0.000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  25.13 
 
 
225 aa  73.9  0.000000000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_4798  cyclic nucleotide-binding protein  27.72 
 
 
227 aa  73.9  0.000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  30.72 
 
 
225 aa  73.9  0.000000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  31.46 
 
 
224 aa  73.9  0.000000000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  29.71 
 
 
224 aa  73.9  0.000000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  32.69 
 
 
225 aa  73.6  0.000000000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  31.46 
 
 
224 aa  73.9  0.000000000002  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  31.46 
 
 
224 aa  73.9  0.000000000002  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_013131  Caci_8335  putative transcriptional regulator, Crp/Fnr family  35.48 
 
 
209 aa  73.2  0.000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.339186  normal 
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  28.27 
 
 
217 aa  72.8  0.000000000004  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3227  CRP/FNR family transcriptional regulator  22.17 
 
 
232 aa  72.4  0.000000000005  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  32.66 
 
 
231 aa  72  0.000000000006  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_013093  Amir_0632  putative transcriptional regulator, Crp/Fnr family  33.17 
 
 
236 aa  72  0.000000000006  Actinosynnema mirum DSM 43827  Bacteria  normal  0.649143  n/a   
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  33.33 
 
 
224 aa  72.4  0.000000000006  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  28.29 
 
 
228 aa  72  0.000000000007  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  29.21 
 
 
224 aa  71.6  0.000000000008  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  30.9 
 
 
224 aa  71.6  0.000000000008  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_008312  Tery_1557  Crp/FNR family transcriptional regulator  29.32 
 
 
234 aa  71.6  0.000000000009  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.986178 
 
 
-
 
NC_007516  Syncc9605_2514  Crp/FNR family transcriptional regulator  29.44 
 
 
231 aa  71.2  0.00000000001  Synechococcus sp. CC9605  Bacteria  normal  normal  0.619242 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  28.35 
 
 
224 aa  70.9  0.00000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1802  transcriptional regulator, Crp/Fnr family  25.52 
 
 
238 aa  71.2  0.00000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  27.65 
 
 
224 aa  70.9  0.00000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  27.46 
 
 
242 aa  70.1  0.00000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  29.75 
 
 
220 aa  70.1  0.00000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  30.39 
 
 
257 aa  70.1  0.00000000003  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_012918  GM21_2448  transcriptional regulator, Crp/Fnr family  28 
 
 
238 aa  69.3  0.00000000005  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011884  Cyan7425_4893  cyclic nucleotide-binding protein  31.51 
 
 
237 aa  68.9  0.00000000006  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3066  Crp/FNR family transcriptional regulator  27.49 
 
 
232 aa  68.2  0.0000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2678  transcriptional regulator, Crp/Fnr family  31.64 
 
 
235 aa  68.2  0.0000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  27.27 
 
 
228 aa  67.8  0.0000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009636  Smed_0098  CRP/FNR family transcriptional regulator  25.25 
 
 
234 aa  68.2  0.0000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.2435  normal 
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  30.36 
 
 
225 aa  67.8  0.0000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_002939  GSU1992  Crp/FNR family transcriptional regulator  27.87 
 
 
226 aa  67  0.0000000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.103472  n/a   
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  24 
 
 
235 aa  66.6  0.0000000003  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  28.95 
 
 
228 aa  66.6  0.0000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  24.71 
 
 
234 aa  66.2  0.0000000003  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_3421  Crp/Fnr family transcriptional regulator  27.23 
 
 
232 aa  65.9  0.0000000004  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1975  Crp/FNR family transcriptional regulator  23.79 
 
 
230 aa  65.9  0.0000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  25.23 
 
 
231 aa  65.9  0.0000000005  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0144  cyclic nucleotide-binding domain-containing protein  27.67 
 
 
227 aa  65.9  0.0000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  0.993696  normal 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  23.12 
 
 
226 aa  65.9  0.0000000005  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  28.65 
 
 
225 aa  65.9  0.0000000005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  25.23 
 
 
231 aa  65.9  0.0000000005  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  27.64 
 
 
231 aa  65.5  0.0000000006  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  29.78 
 
 
223 aa  65.5  0.0000000007  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  23.37 
 
 
227 aa  65.5  0.0000000007  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  21.47 
 
 
236 aa  65.1  0.0000000007  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_008820  P9303_28321  putative regulatory protein  30.46 
 
 
231 aa  65.5  0.0000000007  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.270503 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  25.84 
 
 
225 aa  65.1  0.0000000008  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  31.43 
 
 
252 aa  65.1  0.0000000009  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_009338  Mflv_4388  CRP/FNR family transcriptional regulator  28.98 
 
 
225 aa  65.1  0.0000000009  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0199  Crp/FNR family transcriptional regulator  28.57 
 
 
227 aa  64.7  0.000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  25.29 
 
 
226 aa  64.7  0.000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2323  CRP/FNR family transcriptional regulator  28.81 
 
 
233 aa  64.7  0.000000001  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00053006  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  18.91 
 
 
236 aa  64.3  0.000000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  20.09 
 
 
236 aa  64.7  0.000000001  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_011772  BCG9842_B3176  transcriptional regulator, Crp/Fnr family  22.99 
 
 
230 aa  63.5  0.000000002  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  25.11 
 
 
231 aa  63.9  0.000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  26.32 
 
 
226 aa  64.3  0.000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  27.74 
 
 
224 aa  64.3  0.000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  27.1 
 
 
222 aa  64.3  0.000000002  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  25.52 
 
 
226 aa  64.3  0.000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  25.91 
 
 
232 aa  63.9  0.000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
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