More than 300 homologs were found in PanDaTox collection
for query gene DhcVS_385 on replicon NC_013552
Organism: Dehalococcoides sp. VS



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013552  DhcVS_385  crossover junction endodeoxyribonuclease  100 
 
 
165 aa  333  7e-91  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0443  crossover junction endodeoxyribonuclease RuvC  98.79 
 
 
165 aa  330  8e-90  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0420  crossover junction endodeoxyribonuclease RuvC  92.12 
 
 
167 aa  294  3e-79  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1660  crossover junction endodeoxyribonuclease RuvC  52.98 
 
 
163 aa  159  1e-38  Desulfotomaculum reducens MI-1  Bacteria  normal  0.183319  n/a   
 
 
-
 
NC_009012  Cthe_0180  Holliday junction resolvase  46.15 
 
 
162 aa  156  1e-37  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1452  Holliday junction resolvase  46.45 
 
 
182 aa  152  1e-36  Thermoanaerobacter sp. X514  Bacteria  normal  0.883917  n/a   
 
 
-
 
NC_007644  Moth_1702  crossover junction endodeoxyribonuclease RuvC  51.63 
 
 
167 aa  152  2e-36  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.131729  normal  0.717874 
 
 
-
 
NC_011830  Dhaf_3627  Holliday junction resolvase  49.35 
 
 
165 aa  152  2.9999999999999998e-36  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00535771  n/a   
 
 
-
 
NC_008148  Rxyl_1322  crossover junction endodeoxyribonuclease RuvC  45.45 
 
 
179 aa  148  4e-35  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0725718  n/a   
 
 
-
 
NC_011898  Ccel_1346  Holliday junction resolvase  44.87 
 
 
166 aa  147  4e-35  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000000795843  n/a   
 
 
-
 
NC_011899  Hore_12330  crossover junction endodeoxyribonuclease RuvC  43.03 
 
 
165 aa  147  5e-35  Halothermothrix orenii H 168  Bacteria  normal  0.128626  n/a   
 
 
-
 
NC_011831  Cagg_2595  Holliday junction resolvase  52.98 
 
 
164 aa  142  2e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00143043 
 
 
-
 
NC_012034  Athe_1114  Holliday junction resolvase  45.33 
 
 
164 aa  142  3e-33  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0903  crossover junction endodeoxyribonuclease RuvC  42.68 
 
 
164 aa  142  3e-33  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013162  Coch_0079  Holliday junction resolvase  42.28 
 
 
181 aa  141  3e-33  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2336  Holliday junction resolvase  51.66 
 
 
161 aa  140  6e-33  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0868617  n/a   
 
 
-
 
NC_009483  Gura_1415  Holliday junction resolvase  46.36 
 
 
171 aa  139  9.999999999999999e-33  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00000523238  n/a   
 
 
-
 
NC_010718  Nther_1798  Holliday junction endonuclease RuvC  45.03 
 
 
161 aa  139  1.9999999999999998e-32  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  hitchhiker  0.000582609 
 
 
-
 
NC_011661  Dtur_1614  Holliday junction resolvase  42.38 
 
 
158 aa  137  4.999999999999999e-32  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4753  Holliday junction resolvase  47.68 
 
 
165 aa  137  4.999999999999999e-32  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1377  Holliday junction resolvase  41.61 
 
 
184 aa  137  7e-32  Flavobacterium johnsoniae UW101  Bacteria  normal  0.180632  n/a   
 
 
-
 
NC_013216  Dtox_1109  Holliday junction resolvase  45.03 
 
 
159 aa  137  7.999999999999999e-32  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000000183978  normal 
 
 
-
 
NC_013385  Adeg_1632  crossover junction endodeoxyribonuclease RuvC  42.86 
 
 
160 aa  137  8.999999999999999e-32  Ammonifex degensii KC4  Bacteria  normal  0.286173  n/a   
 
 
-
 
NC_013739  Cwoe_3179  crossover junction endodeoxyribonuclease RuvC  47.02 
 
 
164 aa  136  1e-31  Conexibacter woesei DSM 14684  Bacteria  normal  0.844491  normal 
 
 
-
 
NC_008609  Ppro_2672  Holliday junction resolvase  45.81 
 
 
176 aa  136  1e-31  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00163378  n/a   
 
 
-
 
NC_013730  Slin_2240  crossover junction endodeoxyribonuclease RuvC  41.45 
 
 
182 aa  135  2e-31  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1364  crossover junction endodeoxyribonuclease RuvC  45.1 
 
 
162 aa  135  3.0000000000000003e-31  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.553646  n/a   
 
 
-
 
NC_007517  Gmet_0744  Holliday junction resolvase  44.38 
 
 
164 aa  135  3.0000000000000003e-31  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000123972  normal 
 
 
-
 
NC_008255  CHU_2183  Holliday junction resolvase  43.51 
 
 
200 aa  134  7.000000000000001e-31  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.198911 
 
 
-
 
NC_009712  Mboo_0111  Holliday junction resolvase  44.37 
 
 
156 aa  134  8e-31  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_008576  Mmc1_0478  Holliday junction endonuclease RuvC  40.37 
 
 
180 aa  133  9e-31  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000177165  normal  0.867612 
 
 
-
 
NC_002939  GSU1075  Holliday junction resolvase  45.7 
 
 
164 aa  133  9.999999999999999e-31  Geobacter sulfurreducens PCA  Bacteria  normal  0.228203  n/a   
 
 
-
 
NC_008345  Sfri_2182  Holliday junction resolvase  46.79 
 
 
173 aa  132  1.9999999999999998e-30  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.64085  n/a   
 
 
-
 
NC_014230  CA2559_04920  Holliday junction resolvase  39.47 
 
 
184 aa  132  3e-30  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3314  Holliday junction resolvase  45.28 
 
 
164 aa  130  1.0000000000000001e-29  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0932  Holliday junction resolvase  46.1 
 
 
164 aa  130  1.0000000000000001e-29  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000000000000174044 
 
 
-
 
NC_013132  Cpin_1243  crossover junction endodeoxyribonuclease RuvC  42.95 
 
 
202 aa  127  5.0000000000000004e-29  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_01598  Holliday junction resolvase  46.98 
 
 
173 aa  126  2.0000000000000002e-28  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008709  Ping_0716  crossover junction endodeoxyribonuclease RuvC  46.31 
 
 
173 aa  125  2.0000000000000002e-28  Psychromonas ingrahamii 37  Bacteria  normal  0.075927  normal  0.655045 
 
 
-
 
NC_013456  VEA_003924  crossover junction endodeoxyribonuclease RuvC  46.98 
 
 
173 aa  125  3e-28  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00124897  n/a   
 
 
-
 
NC_010830  Aasi_0769  Holliday junction resolvase  40.37 
 
 
182 aa  125  3e-28  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal 
 
 
-
 
NC_009901  Spea_2364  Holliday junction resolvase  47.33 
 
 
173 aa  125  4.0000000000000003e-28  Shewanella pealeana ATCC 700345  Bacteria  decreased coverage  0.00103097  n/a   
 
 
-
 
NC_008783  BARBAKC583_0151  Holliday junction resolvase  41.88 
 
 
167 aa  124  4.0000000000000003e-28  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_1218  Holliday junction resolvase  40.85 
 
 
168 aa  124  7e-28  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.806199 
 
 
-
 
NC_013061  Phep_0400  crossover junction endodeoxyribonuclease RuvC  39.51 
 
 
187 aa  124  8.000000000000001e-28  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.253093 
 
 
-
 
NC_008009  Acid345_3618  crossover junction endodeoxyribonuclease RuvC  43.42 
 
 
166 aa  123  1e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.1831  normal  0.457471 
 
 
-
 
NC_009457  VC0395_A1438  Holliday junction resolvase  47.65 
 
 
173 aa  123  1e-27  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000000786785  n/a   
 
 
-
 
NC_011312  VSAL_I1887  Holliday junction resolvase  46.31 
 
 
173 aa  123  1e-27  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.903201  n/a   
 
 
-
 
NC_013205  Aaci_2115  crossover junction endodeoxyribonuclease RuvC  46.05 
 
 
184 aa  123  1e-27  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.805464  n/a   
 
 
-
 
NC_007947  Mfla_2354  Holliday junction resolvase  38.82 
 
 
180 aa  122  2e-27  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.542113 
 
 
-
 
NC_011883  Ddes_0740  Holliday junction resolvase  38.89 
 
 
173 aa  122  3e-27  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.100777  n/a   
 
 
-
 
NC_009049  Rsph17029_2208  Holliday junction resolvase  43.51 
 
 
168 aa  121  4e-27  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.147946  normal  0.881162 
 
 
-
 
NC_009718  Fnod_1720  crossover junction endodeoxyribonuclease RuvC  44 
 
 
166 aa  121  4e-27  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.029168  n/a   
 
 
-
 
NC_007796  Mhun_0890  Holliday junction resolvase  42 
 
 
164 aa  121  4e-27  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.0795494 
 
 
-
 
NC_009616  Tmel_1038  Holliday junction resolvase  42.67 
 
 
157 aa  121  4e-27  Thermosipho melanesiensis BI429  Bacteria  normal  0.0318292  n/a   
 
 
-
 
NC_007651  BTH_I1249  Holliday junction resolvase  43.05 
 
 
180 aa  121  5e-27  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0426  Holliday junction resolvase  41.72 
 
 
181 aa  121  5e-27  Cupriavidus metallidurans CH34  Bacteria  normal  0.633574  normal  0.046933 
 
 
-
 
NC_007493  RSP_0556  Holliday junction resolvase  42.86 
 
 
168 aa  120  7e-27  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.657324  n/a   
 
 
-
 
NC_010681  Bphyt_3343  Holliday junction resolvase  43.05 
 
 
180 aa  120  7e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  hitchhiker  0.00888007 
 
 
-
 
NC_009720  Xaut_3065  Holliday junction resolvase  41.33 
 
 
169 aa  120  8e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  0.31187  normal  0.469914 
 
 
-
 
NC_007951  Bxe_A0617  Holliday junction resolvase  43.05 
 
 
180 aa  120  8e-27  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.481352 
 
 
-
 
NC_006348  BMA2355  Holliday junction resolvase  43.05 
 
 
180 aa  120  9.999999999999999e-27  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3364  Holliday junction resolvase  43.05 
 
 
180 aa  119  9.999999999999999e-27  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3405  Holliday junction resolvase  43.05 
 
 
180 aa  120  9.999999999999999e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3399  Holliday junction resolvase  43.05 
 
 
180 aa  120  9.999999999999999e-27  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0719  Holliday junction resolvase  46 
 
 
168 aa  120  9.999999999999999e-27  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_2534  Holliday junction resolvase  43.05 
 
 
180 aa  120  9.999999999999999e-27  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_1433  hypothetical protein  43.59 
 
 
172 aa  120  9.999999999999999e-27  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.000000864662  n/a   
 
 
-
 
NC_008554  Sfum_0995  crossover junction endodeoxyribonuclease RuvC  41.72 
 
 
183 aa  119  9.999999999999999e-27  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.410626  normal 
 
 
-
 
NC_007347  Reut_A0486  Holliday junction resolvase  42.38 
 
 
181 aa  119  1.9999999999999998e-26  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0268  Holliday junction resolvase  43.05 
 
 
284 aa  119  1.9999999999999998e-26  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1878  Holliday junction resolvase  39.87 
 
 
172 aa  119  1.9999999999999998e-26  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  hitchhiker  0.00784729  n/a   
 
 
-
 
NC_013204  Elen_0972  crossover junction endodeoxyribonuclease RuvC  41.25 
 
 
192 aa  119  1.9999999999999998e-26  Eggerthella lenta DSM 2243  Bacteria  normal  hitchhiker  0.00108753 
 
 
-
 
NC_009523  RoseRS_4363  Holliday junction resolvase  46.67 
 
 
168 aa  119  1.9999999999999998e-26  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.140829 
 
 
-
 
NC_008686  Pden_0696  crossover junction endodeoxyribonuclease RuvC  43.51 
 
 
164 aa  119  1.9999999999999998e-26  Paracoccus denitrificans PD1222  Bacteria  normal  0.381333  normal  0.521985 
 
 
-
 
NC_008836  BMA10229_A1130  Holliday junction resolvase  43.05 
 
 
275 aa  119  1.9999999999999998e-26  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_0394  Holliday junction resolvase  41.06 
 
 
181 aa  118  3e-26  Ralstonia pickettii 12D  Bacteria  normal  normal  0.638558 
 
 
-
 
NC_010002  Daci_1480  Holliday junction resolvase  44.44 
 
 
182 aa  118  3.9999999999999996e-26  Delftia acidovorans SPH-1  Bacteria  normal  0.303273  normal 
 
 
-
 
NC_009831  Ssed_2032  Holliday junction resolvase  47.65 
 
 
173 aa  118  3.9999999999999996e-26  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00302461  normal 
 
 
-
 
NC_010622  Bphy_2554  Holliday junction resolvase  42.38 
 
 
180 aa  117  4.9999999999999996e-26  Burkholderia phymatum STM815  Bacteria  normal  0.250708  normal 
 
 
-
 
NC_008309  HS_0509  Holliday junction resolvase  45.93 
 
 
189 aa  117  4.9999999999999996e-26  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0503  Holliday junction resolvase  40.4 
 
 
181 aa  117  6e-26  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.46163 
 
 
-
 
NC_007492  Pfl01_4409  Holliday junction resolvase  39.61 
 
 
175 aa  117  6e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.049138  normal 
 
 
-
 
NC_007005  Psyr_1408  Holliday junction resolvase  38.96 
 
 
174 aa  117  7e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0741674  normal 
 
 
-
 
NC_013525  Tter_0957  crossover junction endodeoxyribonuclease RuvC  42.42 
 
 
171 aa  117  7e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008390  Bamb_0583  Holliday junction resolvase  40 
 
 
183 aa  117  7e-26  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3979  crossover junction endodeoxyribonuclease RuvC  38.71 
 
 
176 aa  117  9e-26  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.175883  n/a   
 
 
-
 
NC_010682  Rpic_0379  Holliday junction resolvase  40.4 
 
 
181 aa  116  9.999999999999999e-26  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0930  Holliday junction resolvase  41.18 
 
 
182 aa  117  9.999999999999999e-26  Variovorax paradoxus S110  Bacteria  normal  0.515185  n/a   
 
 
-
 
NC_009438  Sputcn32_1937  Holliday junction resolvase  45.75 
 
 
173 aa  116  9.999999999999999e-26  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00155576  n/a   
 
 
-
 
NC_010551  BamMC406_0609  Holliday junction resolvase  40 
 
 
183 aa  116  1.9999999999999998e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  0.385188  normal  0.439523 
 
 
-
 
NC_013515  Smon_0984  crossover junction endodeoxyribonuclease RuvC  35.51 
 
 
200 aa  116  1.9999999999999998e-25  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013517  Sterm_1604  crossover junction endodeoxyribonuclease RuvC  39.39 
 
 
192 aa  115  1.9999999999999998e-25  Sebaldella termitidis ATCC 33386  Bacteria  decreased coverage  0.0000000814107  n/a   
 
 
-
 
NC_013501  Rmar_2400  crossover junction endodeoxyribonuclease RuvC  41.29 
 
 
191 aa  116  1.9999999999999998e-25  Rhodothermus marinus DSM 4252  Bacteria  normal  0.553379  n/a   
 
 
-
 
CP001637  EcDH1_1777  crossover junction endodeoxyribonuclease RuvC  42.95 
 
 
173 aa  115  3e-25  Escherichia coli DH1  Bacteria  hitchhiker  0.00202932  n/a   
 
 
-
 
NC_012892  B21_01822  hypothetical protein  42.95 
 
 
173 aa  115  3e-25  Escherichia coli BL21  Bacteria  normal  0.621329  n/a   
 
 
-
 
NC_009800  EcHS_A1956  Holliday junction resolvase  42.95 
 
 
173 aa  115  3e-25  Escherichia coli HS  Bacteria  normal  0.396234  n/a   
 
 
-
 
NC_010468  EcolC_1769  Holliday junction resolvase  42.95 
 
 
173 aa  115  3e-25  Escherichia coli ATCC 8739  Bacteria  normal  0.0125353  normal 
 
 
-
 
NC_010658  SbBS512_E1109  Holliday junction resolvase  42.95 
 
 
173 aa  115  3e-25  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0343  Holliday junction resolvase  45.7 
 
 
165 aa  115  3e-25  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
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