Gene Coch_0079 details

Gene Information

• Locus tag: Coch_0079
• Symbol: ruvC
• ID: 8366481
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: -
• Start bp: 102122
• End bp: 102667
• Gene Length: 546 bp
• Protein Length: 181 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 644982498
• Product: Holliday junction resolvase
• Protein accession: YP_003140205
• Protein GI: 256818926
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0817] Holliday junction resolvasome, endonuclease subunit
• TIGRFAM ID: [TIGR00228] crossover junction endodeoxyribonuclease RuvC

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGAACGCA TTATTTTAGG TATCGACCCA GGCACTACTA TTATGGGGTT TGGGCTTATT 
CAGGTGGAAA GAGATACTAT GAAGCTCTTA CAGCTGAATG AGCTTCAACT TAGTAAATAC 
AGCAATCACT ACTTAAAACT AAGTGTGATT TTTAATCGCA CTTTGGAGCT GATAGATACC 
TATAAGCCTG ATGAATTGGC TATTGAAGCG CCCTTCTTTG GCAAGAACGT ACAATCGATG 
TTGAAACTCG GAAGAGCGCA GGGAGTGGCG ATGGCAGCGG GGCTATCGCG TGAAATTCCT 
ATTACTGAAT ACGAACCTAA AAAGGTGAAA ATGGCTATTA CGGGTAATGG TAGTGCCTCC 
AAGGAACAAG TAGCTAAAAT GCTTCAACAA CTTCTGAATA TAAAAGAACT CCCCAAACAC 
TTTGACGCAA CTGACGGTCT GGCGGTGGCT GTTTGTCACT TTTTTAACGG AGGCAAGTCG 
CAAAAGCAAC AAAGTTATAG TGGTTGGGAC GCTTTTGTAA AACAAAATCA AGACCGTATA 
GGTTAA 

 

Protein sequence

MERIILGIDP GTTIMGFGLI QVERDTMKLL QLNELQLSKY SNHYLKLSVI FNRTLELIDT 
YKPDELAIEA PFFGKNVQSM LKLGRAQGVA MAAGLSREIP ITEYEPKKVK MAITGNGSAS 
KEQVAKMLQQ LLNIKELPKH FDATDGLAVA VCHFFNGGKS QKQQSYSGWD AFVKQNQDRI 
G