Gene Pnuc_1878 details

Gene Information

• Locus tag: Pnuc_1878
• Symbol: ruvC
• ID: 5052148
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: +
• Start bp: 1954340
• End bp: 1954858
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 640472051
• Product: Holliday junction resolvase
• Protein accession: YP_001156654
• Protein GI: 145590057
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0817] Holliday junction resolvasome, endonuclease subunit
• TIGRFAM ID: [TIGR00228] crossover junction endodeoxyribonuclease RuvC

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.00784729
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGGTGGA TTGGAATCGA CCCGGGATTG CGTATTACTG GCTTTGGCGT CATTGATGTC 
GATGGCCAAA AACTGACTTA CGTAGCTTCA GGGACGATTG AAAGTGGCGA TCCTGCCAAA 
GGCTTGCCAG AGCGTCTCGG CGCTCTCTAT GCCGGCGTTA AAGAAGTTCT AGAAACCTAT 
CGACCAGAGC AAGCTGCAAT TGAAGAAGTT TTCTTAAACG TCAATCCACG CTCAACCCTG 
ATGCTTGGAC AAGCCCGGGG GGCAGTAATC GCAGCCCTTG TCTCAGAAAA ACTACCGGTT 
GCTGAATACA GTGCCTTGAG AGTGAAGCAA GCGATTGTAG GAACTGGCCG CGCAGCCAAA 
CCGCAAGTCC AAGAAATGGT AAAACGCCTA CTCCGACTGA GTCGCGCCCC AGGAACGGAT 
GCTTCGGACG CATTAGGTGT GGCTATTTGC GCCGCGCACC ATTCACAAAT ACCAAAAGCA 
ATTACCTCGG CATTAGCCTC CAAGAAACGC AGCAAGTAA 

 

Protein sequence

MRWIGIDPGL RITGFGVIDV DGQKLTYVAS GTIESGDPAK GLPERLGALY AGVKEVLETY 
RPEQAAIEEV FLNVNPRSTL MLGQARGAVI AALVSEKLPV AEYSALRVKQ AIVGTGRAAK 
PQVQEMVKRL LRLSRAPGTD ASDALGVAIC AAHHSQIPKA ITSALASKKR SK