Gene Ssed_2032 details

Gene Information

• Locus tag: Ssed_2032
• Symbol: ruvC
• ID: 5614216
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella sediminis HAW-EB3
• Kingdom: Bacteria
• Replicon accession: NC_009831
• Strand: +
• Start bp: 2460179
• End bp: 2460700
• Gene Length: 522 bp
• Protein Length: 173 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640932918
• Product: Holliday junction resolvase
• Protein accession: YP_001473769
• Protein GI: 157375169
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0817] Holliday junction resolvasome, endonuclease subunit
• TIGRFAM ID: [TIGR00228] crossover junction endodeoxyribonuclease RuvC

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00302461
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 27
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCAATTA TTCTCGGTGT GGATCCAGGT TCAAGGATCA CCGGTTATGG TGTGATCCAG 
TGTATTGGTA GGCACCAGAC ATATTTAGGA AGTGGTTGTA TTCGCACCGC TTCCGATGAC 
CTACCTTATC GACTTAAACA GATTTTTGAT GGCGTTTCTG AAATCATACG TCAATATCAG 
CCCGATGAGT TTGCCATTGA ACGCGTCTTT ATGGCGAAGA ATGCCGATTC GGCACTTAAA 
CTTGGCCAGG CTCGCGGCGC TGCAATTGTT GCTGCAACCA ATGCCGATCT GCCGGTAGCC 
GAATACTCCG CAACTCAGAT AAAAAGTGCG GTTGTTGGAA CGGGTAAAGC GCAGAAATCT 
CAAGTTCAAC ATATGGTTCA ACAGATCCTC AAATTACCCG CCGCTCCCCA GGCCGATGCT 
GCCGACGCAT TAGGCGTCGC TATCTGCCAT TTTCATACCA GCCAAAGTTT AATCGCTTTG 
GGGGGAAGAG CTAACGCAAG AACTTATGGA CGTTACAGAT GA 

 

Protein sequence

MSIILGVDPG SRITGYGVIQ CIGRHQTYLG SGCIRTASDD LPYRLKQIFD GVSEIIRQYQ 
PDEFAIERVF MAKNADSALK LGQARGAAIV AATNADLPVA EYSATQIKSA VVGTGKAQKS 
QVQHMVQQIL KLPAAPQADA ADALGVAICH FHTSQSLIAL GGRANARTYG RYR