Gene Ssed_2032 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2032 
SymbolruvC 
ID5614216 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2460179 
End bp2460700 
Gene Length522 bp 
Protein Length173 aa 
Translation table11 
GC content48% 
IMG OID640932918 
ProductHolliday junction resolvase 
Protein accessionYP_001473769 
Protein GI157375169 
COG category[L] Replication, recombination and repair 
COG ID[COG0817] Holliday junction resolvasome, endonuclease subunit 
TIGRFAM ID[TIGR00228] crossover junction endodeoxyribonuclease RuvC 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00302461 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAATTA TTCTCGGTGT GGATCCAGGT TCAAGGATCA CCGGTTATGG TGTGATCCAG 
TGTATTGGTA GGCACCAGAC ATATTTAGGA AGTGGTTGTA TTCGCACCGC TTCCGATGAC
CTACCTTATC GACTTAAACA GATTTTTGAT GGCGTTTCTG AAATCATACG TCAATATCAG
CCCGATGAGT TTGCCATTGA ACGCGTCTTT ATGGCGAAGA ATGCCGATTC GGCACTTAAA
CTTGGCCAGG CTCGCGGCGC TGCAATTGTT GCTGCAACCA ATGCCGATCT GCCGGTAGCC
GAATACTCCG CAACTCAGAT AAAAAGTGCG GTTGTTGGAA CGGGTAAAGC GCAGAAATCT
CAAGTTCAAC ATATGGTTCA ACAGATCCTC AAATTACCCG CCGCTCCCCA GGCCGATGCT
GCCGACGCAT TAGGCGTCGC TATCTGCCAT TTTCATACCA GCCAAAGTTT AATCGCTTTG
GGGGGAAGAG CTAACGCAAG AACTTATGGA CGTTACAGAT GA
 
Protein sequence
MSIILGVDPG SRITGYGVIQ CIGRHQTYLG SGCIRTASDD LPYRLKQIFD GVSEIIRQYQ 
PDEFAIERVF MAKNADSALK LGQARGAAIV AATNADLPVA EYSATQIKSA VVGTGKAQKS
QVQHMVQQIL KLPAAPQADA ADALGVAICH FHTSQSLIAL GGRANARTYG RYR