More than 300 homologs were found in PanDaTox collection
for query gene Rxyl_1322 on replicon NC_008148
Organism: Rubrobacter xylanophilus DSM 9941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008148  Rxyl_1322  crossover junction endodeoxyribonuclease RuvC  100 
 
 
179 aa  365  1e-100  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0725718  n/a   
 
 
-
 
NC_009012  Cthe_0180  Holliday junction resolvase  57.69 
 
 
162 aa  206  2e-52  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1452  Holliday junction resolvase  53.12 
 
 
182 aa  197  5e-50  Thermoanaerobacter sp. X514  Bacteria  normal  0.883917  n/a   
 
 
-
 
NC_011898  Ccel_1346  Holliday junction resolvase  54.04 
 
 
166 aa  196  1.0000000000000001e-49  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000000795843  n/a   
 
 
-
 
NC_011830  Dhaf_3627  Holliday junction resolvase  61.44 
 
 
165 aa  195  2.0000000000000003e-49  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00535771  n/a   
 
 
-
 
NC_011899  Hore_12330  crossover junction endodeoxyribonuclease RuvC  52.17 
 
 
165 aa  182  2.0000000000000003e-45  Halothermothrix orenii H 168  Bacteria  normal  0.128626  n/a   
 
 
-
 
NC_013171  Apre_0903  crossover junction endodeoxyribonuclease RuvC  50 
 
 
164 aa  181  6e-45  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1702  crossover junction endodeoxyribonuclease RuvC  56.95 
 
 
167 aa  173  9.999999999999999e-43  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.131729  normal  0.717874 
 
 
-
 
NC_011831  Cagg_2595  Holliday junction resolvase  63.58 
 
 
164 aa  173  1.9999999999999998e-42  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00143043 
 
 
-
 
NC_009253  Dred_1660  crossover junction endodeoxyribonuclease RuvC  52.32 
 
 
163 aa  172  2.9999999999999996e-42  Desulfotomaculum reducens MI-1  Bacteria  normal  0.183319  n/a   
 
 
-
 
NC_013216  Dtox_1109  Holliday junction resolvase  54.97 
 
 
159 aa  171  3.9999999999999995e-42  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000000183978  normal 
 
 
-
 
NC_010718  Nther_1798  Holliday junction endonuclease RuvC  47.44 
 
 
161 aa  171  5.999999999999999e-42  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  hitchhiker  0.000582609 
 
 
-
 
NC_012034  Athe_1114  Holliday junction resolvase  49.02 
 
 
164 aa  170  1e-41  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1415  Holliday junction resolvase  51.92 
 
 
171 aa  169  1e-41  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00000523238  n/a   
 
 
-
 
NC_008346  Swol_1433  hypothetical protein  52.94 
 
 
172 aa  168  3e-41  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.000000864662  n/a   
 
 
-
 
NC_012918  GM21_0932  Holliday junction resolvase  50 
 
 
164 aa  168  4e-41  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000000000000174044 
 
 
-
 
NC_009767  Rcas_0719  Holliday junction resolvase  54.65 
 
 
168 aa  166  2e-40  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1632  crossover junction endodeoxyribonuclease RuvC  51.33 
 
 
160 aa  166  2e-40  Ammonifex degensii KC4  Bacteria  normal  0.286173  n/a   
 
 
-
 
NC_011146  Gbem_3314  Holliday junction resolvase  48.73 
 
 
164 aa  165  2.9999999999999998e-40  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2115  crossover junction endodeoxyribonuclease RuvC  60.9 
 
 
184 aa  165  2.9999999999999998e-40  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.805464  n/a   
 
 
-
 
NC_011661  Dtur_1614  Holliday junction resolvase  45.81 
 
 
158 aa  162  3e-39  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4753  Holliday junction resolvase  54.61 
 
 
165 aa  161  4.0000000000000004e-39  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1364  crossover junction endodeoxyribonuclease RuvC  53.16 
 
 
162 aa  159  2e-38  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.553646  n/a   
 
 
-
 
NC_009523  RoseRS_4363  Holliday junction resolvase  57.14 
 
 
168 aa  158  4e-38  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.140829 
 
 
-
 
NC_013739  Cwoe_3179  crossover junction endodeoxyribonuclease RuvC  50.31 
 
 
164 aa  155  3e-37  Conexibacter woesei DSM 14684  Bacteria  normal  0.844491  normal 
 
 
-
 
NC_008609  Ppro_2672  Holliday junction resolvase  49.68 
 
 
176 aa  155  4e-37  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00163378  n/a   
 
 
-
 
NC_007796  Mhun_0890  Holliday junction resolvase  49.69 
 
 
164 aa  152  2e-36  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.0795494 
 
 
-
 
NC_007517  Gmet_0744  Holliday junction resolvase  48.68 
 
 
164 aa  152  2.9999999999999998e-36  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000123972  normal 
 
 
-
 
NC_013522  Taci_0924  crossover junction endodeoxyribonuclease RuvC  54.73 
 
 
165 aa  151  5e-36  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.250191  n/a   
 
 
-
 
NC_002939  GSU1075  Holliday junction resolvase  46.5 
 
 
164 aa  149  2e-35  Geobacter sulfurreducens PCA  Bacteria  normal  0.228203  n/a   
 
 
-
 
NC_013515  Smon_0984  crossover junction endodeoxyribonuclease RuvC  48.53 
 
 
200 aa  149  3e-35  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009712  Mboo_0111  Holliday junction resolvase  48.39 
 
 
156 aa  147  1.0000000000000001e-34  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_011662  Tmz1t_3856  Holliday junction resolvase  49.4 
 
 
183 aa  146  1.0000000000000001e-34  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0503  Holliday junction resolvase  46.84 
 
 
181 aa  145  4.0000000000000006e-34  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.46163 
 
 
-
 
NC_010682  Rpic_0379  Holliday junction resolvase  44.64 
 
 
181 aa  144  5e-34  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_1720  crossover junction endodeoxyribonuclease RuvC  51.97 
 
 
166 aa  144  6e-34  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.029168  n/a   
 
 
-
 
NC_009616  Tmel_1038  Holliday junction resolvase  49.03 
 
 
157 aa  144  7.0000000000000006e-34  Thermosipho melanesiensis BI429  Bacteria  normal  0.0318292  n/a   
 
 
-
 
NC_012856  Rpic12D_0394  Holliday junction resolvase  44.64 
 
 
181 aa  143  1e-33  Ralstonia pickettii 12D  Bacteria  normal  normal  0.638558 
 
 
-
 
NC_007347  Reut_A0486  Holliday junction resolvase  48 
 
 
181 aa  143  1e-33  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2336  Holliday junction resolvase  46.79 
 
 
161 aa  143  1e-33  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0868617  n/a   
 
 
-
 
NC_013525  Tter_0957  crossover junction endodeoxyribonuclease RuvC  50.96 
 
 
171 aa  143  1e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007973  Rmet_0426  Holliday junction resolvase  48 
 
 
181 aa  143  1e-33  Cupriavidus metallidurans CH34  Bacteria  normal  0.633574  normal  0.046933 
 
 
-
 
NC_013517  Sterm_1604  crossover junction endodeoxyribonuclease RuvC  44.53 
 
 
192 aa  142  2e-33  Sebaldella termitidis ATCC 33386  Bacteria  decreased coverage  0.0000000814107  n/a   
 
 
-
 
NC_008709  Ping_0716  crossover junction endodeoxyribonuclease RuvC  45.75 
 
 
173 aa  141  4e-33  Psychromonas ingrahamii 37  Bacteria  normal  0.075927  normal  0.655045 
 
 
-
 
NC_009457  VC0395_A1438  Holliday junction resolvase  46.45 
 
 
173 aa  141  6e-33  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000000786785  n/a   
 
 
-
 
NC_011312  VSAL_I1887  Holliday junction resolvase  45.81 
 
 
173 aa  140  7e-33  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.903201  n/a   
 
 
-
 
NC_009783  VIBHAR_01598  Holliday junction resolvase  46.45 
 
 
173 aa  140  8e-33  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003924  crossover junction endodeoxyribonuclease RuvC  45.81 
 
 
173 aa  140  9.999999999999999e-33  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00124897  n/a   
 
 
-
 
NC_007947  Mfla_2354  Holliday junction resolvase  46.45 
 
 
180 aa  139  1.9999999999999998e-32  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.542113 
 
 
-
 
NC_008576  Mmc1_0478  Holliday junction endonuclease RuvC  45.64 
 
 
180 aa  139  3e-32  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000177165  normal  0.867612 
 
 
-
 
NC_007651  BTH_I1249  Holliday junction resolvase  48.67 
 
 
180 aa  138  3.9999999999999997e-32  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2554  Holliday junction resolvase  48.67 
 
 
180 aa  137  8.999999999999999e-32  Burkholderia phymatum STM815  Bacteria  normal  0.250708  normal 
 
 
-
 
NC_010681  Bphyt_3343  Holliday junction resolvase  48 
 
 
180 aa  137  8.999999999999999e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  hitchhiker  0.00888007 
 
 
-
 
NC_007951  Bxe_A0617  Holliday junction resolvase  48 
 
 
180 aa  136  1e-31  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.481352 
 
 
-
 
NC_010551  BamMC406_0609  Holliday junction resolvase  46.88 
 
 
183 aa  136  2e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.385188  normal  0.439523 
 
 
-
 
NC_009524  PsycPRwf_1433  Holliday junction resolvase  46.01 
 
 
194 aa  135  3.0000000000000003e-31  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2968  Holliday junction resolvase  51.27 
 
 
186 aa  135  3.0000000000000003e-31  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1270  Holliday junction resolvase  48.41 
 
 
174 aa  135  3.0000000000000003e-31  Pseudomonas mendocina ymp  Bacteria  normal  0.460583  normal  0.748169 
 
 
-
 
NC_008390  Bamb_0583  Holliday junction resolvase  48.03 
 
 
183 aa  135  3.0000000000000003e-31  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_2694  Holliday junction resolvase  49.33 
 
 
180 aa  135  3.0000000000000003e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.218252  normal  0.976349 
 
 
-
 
NC_010002  Daci_1480  Holliday junction resolvase  50.65 
 
 
182 aa  135  4e-31  Delftia acidovorans SPH-1  Bacteria  normal  0.303273  normal 
 
 
-
 
NC_009074  BURPS668_3364  Holliday junction resolvase  48 
 
 
180 aa  135  4e-31  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3417  Holliday junction resolvase  46.71 
 
 
182 aa  135  4e-31  Rhodoferax ferrireducens T118  Bacteria  normal  0.124566  n/a   
 
 
-
 
NC_008786  Veis_2947  Holliday junction resolvase  51.97 
 
 
182 aa  135  4e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.977877  normal 
 
 
-
 
NC_008782  Ajs_3658  Holliday junction resolvase  50.63 
 
 
186 aa  135  4e-31  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA2355  Holliday junction resolvase  48 
 
 
180 aa  134  6.0000000000000005e-31  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3405  Holliday junction resolvase  48 
 
 
180 aa  134  6.0000000000000005e-31  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3399  Holliday junction resolvase  48 
 
 
180 aa  134  6.0000000000000005e-31  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0895  crossover junction endodeoxyribonuclease RuvC  44.58 
 
 
167 aa  134  6.0000000000000005e-31  Atopobium parvulum DSM 20469  Bacteria  hitchhiker  0.000302066  normal  0.153116 
 
 
-
 
NC_009080  BMA10247_2534  Holliday junction resolvase  48 
 
 
180 aa  134  6.0000000000000005e-31  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2182  Holliday junction resolvase  42.24 
 
 
173 aa  134  7.000000000000001e-31  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.64085  n/a   
 
 
-
 
NC_007969  Pcryo_0671  Holliday junction resolvase  44.79 
 
 
194 aa  134  8e-31  Psychrobacter cryohalolentis K5  Bacteria  normal  0.674635  normal 
 
 
-
 
NC_002936  DET0443  crossover junction endodeoxyribonuclease RuvC  45.45 
 
 
165 aa  133  9.999999999999999e-31  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_385  crossover junction endodeoxyribonuclease  45.45 
 
 
165 aa  133  9.999999999999999e-31  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0268  Holliday junction resolvase  48 
 
 
284 aa  133  9.999999999999999e-31  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE1864  crossover junction endodeoxyribonuclease RuvC  44.2 
 
 
178 aa  132  1.9999999999999998e-30  Treponema denticola ATCC 35405  Bacteria  decreased coverage  0.000897484  n/a   
 
 
-
 
NC_007204  Psyc_0699  Holliday junction resolvase  44.17 
 
 
194 aa  132  1.9999999999999998e-30  Psychrobacter arcticus 273-4  Bacteria  normal  0.207762  normal 
 
 
-
 
NC_008836  BMA10229_A1130  Holliday junction resolvase  48 
 
 
275 aa  133  1.9999999999999998e-30  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_12860  crossover junction endodeoxyribonuclease RuvC  44.74 
 
 
174 aa  133  1.9999999999999998e-30  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2011  crossover junction endodeoxyribonuclease RuvC  43.31 
 
 
164 aa  132  3e-30  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0207  Holliday junction resolvase  47.33 
 
 
180 aa  132  3e-30  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0690  Holliday junction resolvase  47.33 
 
 
180 aa  132  3e-30  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_0972  crossover junction endodeoxyribonuclease RuvC  43.2 
 
 
192 aa  132  3.9999999999999996e-30  Eggerthella lenta DSM 2243  Bacteria  normal  hitchhiker  0.00108753 
 
 
-
 
NC_007510  Bcep18194_A3776  Holliday junction resolvase  46.67 
 
 
180 aa  131  5e-30  Burkholderia sp. 383  Bacteria  normal  0.518042  normal 
 
 
-
 
NC_010508  Bcenmc03_0657  Holliday junction resolvase  46.67 
 
 
180 aa  131  6e-30  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009455  DehaBAV1_0420  crossover junction endodeoxyribonuclease RuvC  43.75 
 
 
167 aa  130  6.999999999999999e-30  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_51800  Holliday junction resolvase  46.45 
 
 
174 aa  130  7.999999999999999e-30  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000486306 
 
 
-
 
NC_009656  PSPA7_4543  Holliday junction resolvase  45.81 
 
 
174 aa  129  2.0000000000000002e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_2183  Holliday junction resolvase  38.56 
 
 
200 aa  129  2.0000000000000002e-29  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.198911 
 
 
-
 
NC_008686  Pden_0696  crossover junction endodeoxyribonuclease RuvC  46.67 
 
 
164 aa  129  2.0000000000000002e-29  Paracoccus denitrificans PD1222  Bacteria  normal  0.381333  normal  0.521985 
 
 
-
 
NC_013061  Phep_0400  crossover junction endodeoxyribonuclease RuvC  36.69 
 
 
187 aa  129  2.0000000000000002e-29  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.253093 
 
 
-
 
NC_008825  Mpe_A0482  Holliday junction resolvase  49.02 
 
 
184 aa  128  3e-29  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.0464061 
 
 
-
 
NC_008554  Sfum_0995  crossover junction endodeoxyribonuclease RuvC  43.24 
 
 
183 aa  129  3e-29  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.410626  normal 
 
 
-
 
NC_013132  Cpin_1243  crossover junction endodeoxyribonuclease RuvC  41.51 
 
 
202 aa  128  4.0000000000000003e-29  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_1666  crossover junction endodeoxyribonuclease RuvC  43.42 
 
 
163 aa  128  5.0000000000000004e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_07030  crossover junction endodeoxyribonuclease RuvC  44.08 
 
 
165 aa  127  6e-29  Slackia heliotrinireducens DSM 20476  Bacteria  decreased coverage  0.000194314  normal  0.296999 
 
 
-
 
NC_012791  Vapar_0930  Holliday junction resolvase  48.03 
 
 
182 aa  127  6e-29  Variovorax paradoxus S110  Bacteria  normal  0.515185  n/a   
 
 
-
 
NC_012560  Avin_36710  Holliday junction resolvase  50.63 
 
 
174 aa  127  8.000000000000001e-29  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2778  Holliday junction resolvase  47.06 
 
 
173 aa  127  8.000000000000001e-29  Serratia proteamaculans 568  Bacteria  normal  0.0426005  normal  0.0283844 
 
 
-
 
NC_013173  Dbac_3491  Holliday junction resolvase  42.01 
 
 
173 aa  127  9.000000000000001e-29  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
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